Commits · ae622b72c3894d12aee1216e16c2a484375c33ee · Mirrors / biopet.biopet

Oct 06, 2015
- raise even more memory · ae622b72
  Peter van 't Hof authored 9 years ago
  
  ae622b72
- Fixed tests in flexiprep · 95ae061e
  Peter van 't Hof authored 9 years ago
  
  95ae061e
- Raised some memory · e404aa7b
  Peter van 't Hof authored 9 years ago
  
  e404aa7b
- Always execute fastqc_qc · 85f7eb91
  Peter van 't Hof authored 9 years ago
  
  85f7eb91
- Added adapters to summary · 2d241e33
  Peter van 't Hof authored 9 years ago
  
  2d241e33
Oct 05, 2015
- Merge branch 'feature-pipeable' into 'develop' · e32722e8
  Sander Bollen authored 9 years ago
  
  Feature pipeable Fixes #114 See merge request !234
  e32722e8
- Removed out commented tests · b733ff34
  Peter van 't Hof authored 9 years ago
  
  b733ff34
- Moved doc to scala docs · ea03623c
  Peter van 't Hof authored 9 years ago
  
  ea03623c
- Added scala docs · 31344c21
  Peter van 't Hof authored 9 years ago
  
  31344c21
- Improved error handeling on executable check · e74cdf5b
  Peter van 't Hof authored 9 years ago
  
  e74cdf5b
- Fix cores on bamOutput option · 894af898
  Peter van 't Hof authored 9 years ago
  
  894af898
- Merge branch 'fix-bammetrics_summary' into 'develop' · 3c4a8dec
  Sander Bollen authored 9 years ago
  
  Fix for #210 Fixes #210 See merge request !242
  3c4a8dec
- Remove useless lines · 31822f0a
  Peter van 't Hof authored 9 years ago
  
  31822f0a
- Fix single end dependency · 936e77a0
  Peter van 't Hof authored 9 years ago
  
  936e77a0
Oct 02, 2015
- Fix code style warnings · 52928227
  Peter van 't Hof authored 9 years ago
  
  52928227
- Removed zcat step · 699c7baf
  Peter van 't Hof authored 9 years ago
  
  699c7baf
- Move input for gzip to stdin to not remove file · 2156f192
  Peter van 't Hof authored 9 years ago
  
  2156f192
- Fixed graph issue · 47b02b54
  Peter van 't Hof authored 9 years ago
  
  47b02b54
- Fixed summary files of flexiprep · 5d5c30c1
  Peter van 't Hof authored 9 years ago
  
  5d5c30c1
- Fixed issue · a7da2f6a
  Peter van 't Hof authored 9 years ago
  
  a7da2f6a
Oct 01, 2015
- Fix for #210 · 3c228abe
  Peter van 't Hof authored 9 years ago
  
  (cherry picked from commit 910074b8)
  3c228abe
- setupRetry calls setupretry of pipe functions · 86c0c144
  Peter van 't Hof authored 9 years ago
  
  86c0c144
- Fix java memory resource · 15dda798
  Peter van 't Hof authored 9 years ago
  
  15dda798
- Fixed vmem · 06b9e5f2
  Peter van 't Hof authored 9 years ago
  
  06b9e5f2
- fixed regex · 7bd889e4
  Peter van 't Hof authored 9 years ago
  
  7bd889e4
- Fix deps · 7b028085
  Peter van 't Hof authored 9 years ago
  
  7b028085
- Switch to CommandLineResources · 72761225
  Peter van 't Hof authored 9 years ago
  
  72761225
- Use combine resources for pipes · 1199a39e
  Peter van 't Hof authored 9 years ago
  
  1199a39e
- Extracted resoures to trait, usable on non biopet CommandLineFunctions · e7a138d9
  Peter van 't Hof authored 9 years ago
  
  e7a138d9
Sep 30, 2015
- Removed test · 310b07ef
  Peter van 't Hof authored 9 years ago
  
  310b07ef
- Bash script to keep track of running jobs · ade862a4
  Peter van 't Hof authored 9 years ago
  
  ade862a4
Sep 29, 2015
- Switch to fifo pipes · 8ae539f7
  Peter van 't Hof authored 9 years ago
  
  8ae539f7
- Added set limits to bash script · 9230f543
  Peter van 't Hof authored 9 years ago
  
  9230f543
Sep 28, 2015
- Fix for #210 · 910074b8
  Peter van 't Hof authored 9 years ago
  
  910074b8
- Changed own vmem · adb6ffe1
  Peter van 't Hof authored 9 years ago
  
  adb6ffe1
- Adding summary stats · f42be845
  Peter van 't Hof authored 9 years ago
  
  f42be845
- Fixed resources · 6fc77a78
  Peter van 't Hof authored 9 years ago
  
  6fc77a78
- Set remote command for local execution · 3ae49381
  Peter van 't Hof authored 9 years ago
  
  3ae49381
- Aggregate threads and corememory for pipes · dd6dc7b7
  Peter van 't Hof authored 9 years ago
  
  dd6dc7b7
- Catch NullPointer from queue and convert is to null instead of an failure · bdd9ce38
  Peter van 't Hof authored 9 years ago
  
  bdd9ce38