Commit 2156f192 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Move input for gzip to stdin to not remove file

parent 47b02b54
......@@ -107,9 +107,8 @@ class QcCommand(val root: Configurable, val fastqc: Fastqc) extends BiopetComman
if (compress) outputCommand = {
val gzip = new Gzip(root)
gzip.input = outputFile :: Nil
gzip.output = output
outputFile :<: gzip
else outputCommand = {
val cat = new Cat(root)
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