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biopet.biopet
Commits
ea03623c
Commit
ea03623c
authored
Oct 05, 2015
by
Peter van 't Hof
Browse files
Moved doc to scala docs
parent
31344c21
Changes
1
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public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/FastqSync.scala
View file @
ea03623c
...
...
@@ -34,22 +34,28 @@ class FastqSync(val root: Configurable) extends ToolCommandFuntion with Summariz
def
toolObject
=
nl
.
lumc
.
sasc
.
biopet
.
tools
.
FastqSync
@Input
(
doc
=
"Original FASTQ file (read 1 or 2)"
,
shortName
=
"r"
,
required
=
true
)
/** Original FASTQ file (read 1 or 2) */
@Input
(
required
=
true
)
var
refFastq
:
File
=
null
/** "Input read 1 FASTQ file" */
@Input
(
required
=
true
)
var
inputFastq1
:
File
=
null
/** Input read 2 FASTQ file */
@Input
(
required
=
true
)
var
inputFastq2
:
File
=
null
@Output
(
doc
=
"Output read 1 FASTQ file"
,
shortName
=
"o"
,
required
=
true
)
/** Output read 1 FASTQ file */
@Output
(
required
=
true
)
var
outputFastq1
:
File
=
null
@Output
(
doc
=
"Output read 2 FASTQ file"
,
shortName
=
"p"
,
required
=
true
)
/** Output read 2 FASTQ file */
@Output
(
required
=
true
)
var
outputFastq2
:
File
=
null
@Output
(
doc
=
"Sync statistics"
,
required
=
true
)
/** Sync statistics */
@Output
(
required
=
true
)
var
outputStats
:
File
=
null
override
def
defaultCoreMemory
=
4.0
...
...
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