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Commit 95ae061e authored by Peter van 't Hof's avatar Peter van 't Hof
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Fixed tests in flexiprep

parent e404aa7b
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public/flexiprep/src/test/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/FlexiprepTest.scala
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......@@ -73,11 +73,7 @@ class FlexiprepTest extends TestNGSuite with Matchers {
flexiprep.libId = Some("1")
flexiprep.script()
flexiprep.functions.count(_.isInstanceOf[Fastqc]) shouldBe (
if (paired && (skipClip && skipTrim)) 2
else if (!paired && (skipClip && skipTrim)) 1
else if (paired && !(skipClip && skipTrim)) 4
else if (!paired && !(skipClip && skipTrim)) 2)
flexiprep.functions.count(_.isInstanceOf[Fastqc]) shouldBe (if (paired) 4 else 2)
flexiprep.functions.count(_.isInstanceOf[SeqStat]) shouldBe (if (paired) 4 else 2)
}
......
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