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biopet.biopet
Commits
86c0c144
Commit
86c0c144
authored
Oct 01, 2015
by
Peter van 't Hof
Browse files
setupRetry calls setupretry of pipe functions
parent
15dda798
Changes
2
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public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/BiopetFifoPipe.scala
View file @
86c0c144
...
...
@@ -74,6 +74,12 @@ class BiopetFifoPipe(val root: Configurable,
override
def
setResources
()
:
Unit
=
{
combineResources
(
commands
)
}
override
def
setupRetry
()
:
Unit
=
{
super
.
setupRetry
()
commands
.
foreach
(
_
.
setupRetry
())
combineResources
(
commands
)
}
}
object
BiopetFifoPipe
{
...
...
public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/BiopetPipe.scala
View file @
86c0c144
...
...
@@ -49,6 +49,12 @@ class BiopetPipe(val commands: List[BiopetCommandLineFunction]) extends BiopetCo
combineResources
(
pipesJobs
)
}
override
def
setupRetry
()
:
Unit
=
{
super
.
setupRetry
()
commands
.
foreach
(
_
.
setupRetry
())
combineResources
(
commands
)
}
override
def
defaultCoreMemory
=
0.0
override
def
defaultThreads
=
0
...
...
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