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biopet.biopet
Commits
31822f0a
Commit
31822f0a
authored
Oct 05, 2015
by
Peter van 't Hof
Browse files
Remove useless lines
parent
936e77a0
Changes
1
Hide whitespace changes
Inline
Side-by-side
public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
View file @
31822f0a
...
...
@@ -198,12 +198,8 @@ class Flexiprep(val root: Configurable) extends QScript with SummaryQScript with
fqSync
.
outputFastq1
=
fastqR1Qc
fqSync
.
outputFastq2
=
fastqR2Qc
.
get
fqSync
.
outputStats
=
new
File
(
outDir
,
s
"${sampleId.getOrElse("
x
")}-${libId.getOrElse("
x
")}.sync.stats"
)
//add(fqSync)
val
pipe
=
new
BiopetFifoPipe
(
this
,
fqSync
::
Nil
)
{
override
def
defaultThreads
=
4
override
def
defaultCoreMemory
=
4.0
override
def
configName
=
"qc-cmd"
override
def
beforeGraph
()
:
Unit
=
{
...
...
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