Explore projects

Mirror of https://github.com/LOVDnl/LOVD3.git

Comparative genomics project of Ruminococcus gnavus, with additional prevalence and abundance analysis of worldwide metagenomic datasets.

Generate metagenome-assembled genomes of Ruminococcus gnavus from recurrent Clostridioides difficile infected patient metagenomes

Supporting material for our programming course

A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.

A Python interface to gb-io, a fast GenBank parser and serializer written in Rust.

Website and materials for our Git courses

PyO3 bindings and Python interface to skani, a method for fast fast genomic identity calculation using sparse chaining.

A lightweight platform-accelerated library for biological motif scanning using position weight matrices.

Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.

Cython bindings and Python interface to Jess, a 3D template matching software.

LacyTools with some fixes

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes.

Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.

Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a method for fast database search.

Cython bindings and Python interface to HMMER3.

Rust re-implementation of the MinCED algorithm to Detect Instances of CRISPRs in Environmental Data.

Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.