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biopet.biopet
Commits
a7da2f6a
Commit
a7da2f6a
authored
Oct 02, 2015
by
Peter van 't Hof
Browse files
Fixed issue
parent
86c0c144
Changes
2
Hide whitespace changes
Inline
Side-by-side
public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/BiopetFifoPipe.scala
View file @
a7da2f6a
...
...
@@ -80,6 +80,11 @@ class BiopetFifoPipe(val root: Configurable,
commands
.
foreach
(
_
.
setupRetry
())
combineResources
(
commands
)
}
override
def
freezeFieldValues
()
:
Unit
=
{
super
.
freezeFieldValues
()
commands
.
foreach
(
_
.
qSettings
=
qSettings
)
}
}
object
BiopetFifoPipe
{
...
...
public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/BiopetPipe.scala
View file @
a7da2f6a
...
...
@@ -66,4 +66,9 @@ class BiopetPipe(val commands: List[BiopetCommandLineFunction]) extends BiopetCo
}
else
""
)
+
" | "
+
commands
.
tail
.
map
(
_
.
cmdLine
).
mkString
(
" | "
)
+
(
if
(
commands
.
last
.
stdoutFile
.
isDefined
)
" > "
+
required
(
commands
.
last
.
stdoutFile
.
map
(
_
.
getAbsoluteFile
))
else
""
)
+
")"
}
override
def
freezeFieldValues
()
:
Unit
=
{
super
.
freezeFieldValues
()
commands
.
foreach
(
_
.
qSettings
=
qSettings
)
}
}
\ No newline at end of file
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