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e7a138d9

Commit e7a138d9 authored 9 years ago by Peter van 't Hof

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Extracted resoures to trait, usable on non biopet CommandLineFunctions

parent 310b07ef

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protected/biopet-gatk-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/HaplotypeCaller.scala 0 additions, 1 deletion

...c/sasc/biopet/extensions/gatk/broad/HaplotypeCaller.scala
public/basty/src/main/scala/nl/lumc/sasc/biopet/pipelines/basty/BastyTrait.scala 0 additions, 1 deletion

...cala/nl/lumc/sasc/biopet/pipelines/basty/BastyTrait.scala
public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunction.scala 1 addition, 77 deletions

.../nl/lumc/sasc/biopet/core/BiopetCommandLineFunction.scala
public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/CommandLineResources.scala 97 additions, 0 deletions

...scala/nl/lumc/sasc/biopet/core/CommandLineResources.scala
public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/Raxml.scala 0 additions, 1 deletion

...src/main/scala/nl/lumc/sasc/biopet/extensions/Raxml.scala

with 98 additions and 80 deletions

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