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biopet.biopet
Commits
e404aa7b
Commit
e404aa7b
authored
Oct 06, 2015
by
Peter van 't Hof
Browse files
Raised some memory
parent
85f7eb91
Changes
2
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public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/CollectGcBiasMetrics.scala
View file @
e404aa7b
...
...
@@ -53,6 +53,8 @@ class CollectGcBiasMetrics(val root: Configurable) extends Picard with Summariza
@Argument
(
doc
=
"IS_BISULFITE_SEQUENCED"
,
required
=
false
)
var
isBisulfiteSequinced
:
Option
[
Boolean
]
=
config
(
"isbisulfitesequinced"
)
override
def
defaultCoreMemory
=
5.0
override
def
beforeGraph
()
{
super
.
beforeGraph
()
if
(
outputChart
==
null
)
outputChart
=
new
File
(
output
+
".pdf"
)
...
...
public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/CollectMultipleMetrics.scala
View file @
e404aa7b
...
...
@@ -33,7 +33,7 @@ class CollectMultipleMetrics(val root: Configurable) extends Picard with Summari
javaMainClass
=
new
picard
.
analysis
.
CollectMultipleMetrics
().
getClass
.
getName
override
def
defaultCoreMemory
=
6
.0
override
def
defaultCoreMemory
=
8
.0
@Input
(
doc
=
"The input SAM or BAM files to analyze"
,
required
=
true
)
var
input
:
File
=
null
...
...
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