Commits · 8af58a0b3a1ba166b2fdc28a33f81459e731aed0 · Mirrors / biopet.biopet

Jan 15, 2016
- Fix input of bams to svcalling tools.. · 8af58a0b
  Wai Yi Leung authored 9 years ago
  
  8af58a0b
Jan 14, 2016
- Fix compile errors · e42f7355
  Wai Yi Leung authored 9 years ago
  
  e42f7355
- Adding Pindel to ShivaSVCalling · d1384de8
  Wai Yi Leung authored 9 years ago
  
  d1384de8
Jan 10, 2016
- Fixed type · bf11fd13
  Peter van 't Hof authored 9 years ago
  
  bf11fd13
Jan 08, 2016
- Code improvement · 26f84c6a
  Peter van 't Hof authored 9 years ago
  
  26f84c6a
Jan 06, 2016
- Moved summaryFile · 4143a145
  Peter van 't Hof authored 9 years ago
  
  4143a145
Dec 28, 2015
- Fix format · 4078fca2
  Peter van 't Hof authored 9 years ago
  
  4078fca2
- Fixed traits · 7accfa72
  Peter van 't Hof authored 9 years ago
  
  7accfa72
- Remove redudant summary entry · 00a7a89a
  Peter van 't Hof authored 9 years ago
  
  00a7a89a
Dec 22, 2015
- Switch shiva to multisample mapping · b1e56b71
  Peter van 't Hof authored 9 years ago
  
  b1e56b71
Dec 11, 2015
- Fixed typo · 1bf61988
  Peter van 't Hof authored 9 years ago
  
  1bf61988
Dec 03, 2015
- Added plot · 27b892e6
  Peter van 't Hof authored 9 years ago
  
  27b892e6
- Fixed wrong tag · 692208f2
  Peter van 't Hof authored 9 years ago
  
  692208f2
Nov 29, 2015
- Added index to vt jobs · 6cb4dcbe
  Peter van 't Hof authored 9 years ago
  
  6cb4dcbe
- Fixed md5sums · 3f7a6044
  Peter van 't Hof authored 9 years ago
  
  3f7a6044
Nov 26, 2015
- Fix vcf stats · 7aeda35f
  Peter van 't Hof authored 9 years ago
  
  7aeda35f
Nov 25, 2015
- Style fixes · 02639191
  Peter van 't Hof authored 9 years ago
  
  02639191
- Move mini pipeline delly · 05233c6b
  Peter van 't Hof authored 9 years ago
  
  05233c6b
- Remove whitespace · f64fad3c
  Peter van 't Hof authored 9 years ago
  
  f64fad3c
Nov 24, 2015
- Fixed outputDirs · 946ea4c2
  Peter van 't Hof authored 9 years ago
  
  946ea4c2
- Convert breakdancer to sub pipeline of shiva · 60fc26c3
  Peter van 't Hof authored 9 years ago
  
  60fc26c3
- Bump version to 0.6.0-SNAPSHOT · ac785920
  Peter van 't Hof authored 9 years ago
  
  ac785920
- Bump version to 0.5.0 · c5303e8c
  Peter van 't Hof authored 9 years ago
  
  c5303e8c
- Split into separated files · aefd3a63
  Peter van 't Hof authored 9 years ago
  
  aefd3a63
- Split sv callers into separated classes · d97202a8
  Peter van 't Hof authored 9 years ago
  
  d97202a8
Nov 23, 2015
- Bump to 0.5.0-RC2 · 16d2711f
  Peter van 't Hof authored 9 years ago
  
  16d2711f
- Added target variants to report · 6f6a76e7
  Peter van 't Hof authored 9 years ago
  
  6f6a76e7
- Added intermediate · 27813378
  Peter van 't Hof authored 9 years ago
  
  27813378
- Fixed nameprefix · 38402a6c
  Peter van 't Hof authored 9 years ago
  
  38402a6c
- Added module to config value · 2c8b6f02
  Peter van 't Hof authored 9 years ago
  
  2c8b6f02
- Adding decompose option to shiva · 04f343cb
  Peter van 't Hof authored 9 years ago
  
  04f343cb
Nov 20, 2015
- Added normalize option to shiva · ac9315e7
  Peter van 't Hof authored 9 years ago
  
  ac9315e7
- Added vcf stats for each region bed file · 991c07af
  Peter van 't Hof authored 9 years ago
  
  991c07af
- Split variantcalllers in separated files · 89b7a259
  Peter van 't Hof authored 9 years ago
  
  89b7a259
Nov 19, 2015
- Bumb version to 0.5.0-RC1 · 19a93bbb
  Peter van 't Hof authored 9 years ago
  
  19a93bbb
- Sync with develop · 38461999
  Wai Yi Leung authored 9 years ago
  
  38461999
- Fixed bug in loading the mainClass for biopet tools · 7f424eb9
  Peter van 't Hof authored 9 years ago
  
  7f424eb9
Nov 11, 2015
- Add fixme · 2a64a1d6
  Peter van 't Hof authored 9 years ago
  
  2a64a1d6
- Disabled intermediate markduplicates · 364b0d00
  Peter van 't Hof authored 9 years ago
  
  364b0d00
Nov 08, 2015
- Enforce absolute paths for input files · 10524ce8
  Peter van 't Hof authored 9 years ago
  
  10524ce8