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991c07af

Commit 991c07af authored 9 years ago by Peter van 't Hof

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Added vcf stats for each region bed file

parent ea781d9b

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public/bammetrics/src/main/scala/nl/lumc/sasc/biopet/pipelines/bammetrics/BamMetrics.scala 2 additions, 7 deletions

...nl/lumc/sasc/biopet/pipelines/bammetrics/BamMetrics.scala
public/bammetrics/src/main/scala/nl/lumc/sasc/biopet/pipelines/bammetrics/TargetRegions.scala 16 additions, 0 deletions

...lumc/sasc/biopet/pipelines/bammetrics/TargetRegions.scala
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/VcfStats.scala 3 additions, 1 deletion

...scala/nl/lumc/sasc/biopet/extensions/tools/VcfStats.scala
public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala 1 addition, 8 deletions

...cala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala
public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcallingTrait.scala 34 additions, 28 deletions

...asc/biopet/pipelines/shiva/ShivaVariantcallingTrait.scala

with 56 additions and 44 deletions

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