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biopet.biopet
Commits
7aeda35f
Commit
7aeda35f
authored
Nov 26, 2015
by
Peter van 't Hof
Browse files
Fix vcf stats
parent
8b6724c1
Changes
1
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public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcallingTrait.scala
View file @
7aeda35f
...
...
@@ -127,7 +127,7 @@ trait ShivaVariantcallingTrait extends SummaryQScript
val
vcfStats
=
new
VcfStats
(
qscript
)
vcfStats
.
input
=
vcfFile
vcfStats
.
setOutputDir
(
new
File
(
vcfFile
.
getParentFile
,
"vcfstats"
))
vcfStats
.
infoTags
:+=
"VariantCaller"
if
(
name
==
"final"
)
vcfStats
.
infoTags
:+=
"VariantCaller"
add
(
vcfStats
)
addSummarizable
(
vcfStats
,
s
"$namePrefix-vcfstats-$name"
)
...
...
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