Commit 1bf61988 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fixed typo

parent 27b892e6
......@@ -100,7 +100,7 @@ trait ShivaVariantcallingTrait extends SummaryQScript
val vtDecompose = new VtDecompose(this)
if (normalize && decompose) {
vtNormalize.outputVcf = swapExt(caller.outputDir, caller.outputFile, ".vcf.gz", ".normaize.vcf.gz")
vtNormalize.outputVcf = swapExt(caller.outputDir, caller.outputFile, ".vcf.gz", ".normalized.vcf.gz")
vtNormalize.isIntermediate = true
add(vtNormalize, Tabix(this, vtNormalize.outputVcf))
vtDecompose.inputVcf = vtNormalize.outputVcf
......@@ -108,7 +108,7 @@ trait ShivaVariantcallingTrait extends SummaryQScript
add(vtDecompose, Tabix(this, vtDecompose.outputVcf))
cv.addInput(vtDecompose.outputVcf, caller.name)
} else if (normalize && !decompose) {
vtNormalize.outputVcf = swapExt(caller.outputDir, caller.outputFile, ".vcf.gz", ".normaize.vcf.gz")
vtNormalize.outputVcf = swapExt(caller.outputDir, caller.outputFile, ".vcf.gz", ".normalized.vcf.gz")
add(vtNormalize, Tabix(this, vtNormalize.outputVcf))
cv.addInput(vtNormalize.outputVcf, caller.name)
} else if (!normalize && decompose) {
......
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