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Commit 2c8b6f02 authored by Peter van 't Hof's avatar Peter van 't Hof
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Added module to config value

parent 04f343cb
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public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcallingTrait.scala
+ 2
− 2
View file @ 2c8b6f02
......@@ -88,8 +88,8 @@ trait ShivaVariantcallingTrait extends SummaryQScript
caller.inputBams = inputBams
add(caller)
addStats(caller.outputFile, caller.name)
val normalize: Boolean = config("execute_vt_normalize", default = false)
val decompose: Boolean = config("execute_vt_decompose", default = false)
val normalize: Boolean = config("execute_vt_normalize", default = false, submodule = caller.configName)
val decompose: Boolean = config("execute_vt_decompose", default = false, submodule = caller.configName)
val vtNormalize = new VtNormalize(this)
vtNormalize.inputVcf = caller.outputFile
......
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