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Commit 364b0d00 authored by Peter van 't Hof's avatar Peter van 't Hof
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Disabled intermediate markduplicates

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public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala
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......@@ -262,7 +262,7 @@ trait ShivaTrait extends MultiSampleQScript with Reference {
md.input = input
md.output = new File(sampleDir, sampleId + ".dedup.bam")
md.outputMetrics = new File(sampleDir, sampleId + ".dedup.metrics")
md.isIntermediate = isIntermediate
//md.isIntermediate = isIntermediate
add(md)
addSummarizable(md, "mark_duplicates")
Some(md.output)
......
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