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biopet.biopet
Commits
38402a6c
Commit
38402a6c
authored
Nov 23, 2015
by
Peter van 't Hof
Browse files
Fixed nameprefix
parent
ba626927
Changes
1
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public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcallingTrait.scala
View file @
38402a6c
...
...
@@ -86,6 +86,7 @@ trait ShivaVariantcallingTrait extends SummaryQScript
cv
.
rodPriorityList
=
callers
.
map
(
_
.
name
).
mkString
(
","
)
for
(
caller
<-
callers
)
{
caller
.
inputBams
=
inputBams
caller
.
namePrefix
=
namePrefix
add
(
caller
)
addStats
(
caller
.
outputFile
,
caller
.
name
)
val
normalize
:
Boolean
=
config
(
"execute_vt_normalize"
,
default
=
false
,
submodule
=
caller
.
configName
)
...
...
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