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biopet.biopet
Commits
2a64a1d6
Commit
2a64a1d6
authored
Nov 11, 2015
by
Peter van 't Hof
Browse files
Add fixme
parent
364b0d00
Changes
1
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public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala
View file @
2a64a1d6
...
...
@@ -262,6 +262,7 @@ trait ShivaTrait extends MultiSampleQScript with Reference {
md
.
input
=
input
md
.
output
=
new
File
(
sampleDir
,
sampleId
+
".dedup.bam"
)
md
.
outputMetrics
=
new
File
(
sampleDir
,
sampleId
+
".dedup.metrics"
)
//FIXME: making this file intermediate make the pipeline restart unnessery jobs
//md.isIntermediate = isIntermediate
add
(
md
)
addSummarizable
(
md
,
"mark_duplicates"
)
...
...
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