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Commit 2a64a1d6 authored by Peter van 't Hof's avatar Peter van 't Hof
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Add fixme

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public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala
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......@@ -262,6 +262,7 @@ trait ShivaTrait extends MultiSampleQScript with Reference {
md.input = input
md.output = new File(sampleDir, sampleId + ".dedup.bam")
md.outputMetrics = new File(sampleDir, sampleId + ".dedup.metrics")
//FIXME: making this file intermediate make the pipeline restart unnessery jobs
//md.isIntermediate = isIntermediate
add(md)
addSummarizable(md, "mark_duplicates")
......
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