Commit 2a64a1d6 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Add fixme

parent 364b0d00
......@@ -262,6 +262,7 @@ trait ShivaTrait extends MultiSampleQScript with Reference {
md.input = input
md.output = new File(sampleDir, sampleId + ".dedup.bam")
md.outputMetrics = new File(sampleDir, sampleId + ".dedup.metrics")
//FIXME: making this file intermediate make the pipeline restart unnessery jobs
//md.isIntermediate = isIntermediate
addSummarizable(md, "mark_duplicates")
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