Moved summaryFile

public/carp/src/main/scala/nl/lumc/sasc/biopet/pipelines/carp/Carp.scala

@@ -52,7 +52,7 @@ class Carp(val root: Configurable) extends QScript with MultisampleMappingTrait
     )
   )
 
-  override def summaryFile = new File(outputDir, "Carp.summary.json")
+  def summaryFile = new File(outputDir, "Carp.summary.json")
 
   override def makeSample(id: String) = new Sample(id)
   class Sample(sampleId: String) extends super.Sample(sampleId) {

public/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/MultisampleMappingTrait.scala

@@ -41,8 +41,6 @@ trait MultisampleMappingTrait extends MultiSampleQScript
     // this code will be executed after all code of all samples is executed
   }
 
-  def summaryFile: File = new File(outputDir, "MultisamplePipeline.summary.json")
-
   def summaryFiles: Map[String, File] = Map("referenceFasta" -> referenceFasta())
 
   def summarySettings: Map[String, Any] = Map(
@@ -199,6 +197,8 @@ trait MultisampleMappingTrait extends MultiSampleQScript
 
 class MultisampleMapping(val root: Configurable) extends QScript with MultisampleMappingTrait {
   def this() = this(null)
+
+  def summaryFile: File = new File(outputDir, "MultisamplePipeline.summary.json")
 }
 
 object MultisampleMapping extends PipelineCommand {

public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala

@@ -154,7 +154,7 @@ trait ShivaTrait extends MultisampleMappingTrait with Reference with TargetRegio
   }
 
   /** Location of summary file */
-  override def summaryFile = new File(outputDir, "Shiva.summary.json")
+  def summaryFile = new File(outputDir, "Shiva.summary.json")
 
   /** Settings of pipeline for summary */
   override def summarySettings = super.summarySettings ++ Map(