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biopet.biopet
Commits
bf11fd13
Commit
bf11fd13
authored
Jan 10, 2016
by
Peter van 't Hof
Browse files
Fixed type
parent
26f84c6a
Changes
2
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protected/biopet-gatk-pipelines/src/main/scala/nl/lumc/sasc/biopet/pipelines/gatk/Shiva.scala
View file @
bf11fd13
...
...
@@ -21,7 +21,7 @@ class Shiva(val root: Configurable) extends QScript with ShivaTrait {
def
this
()
=
this
(
null
)
/** Make variantcalling submodule, this with the gatk modes in there */
override
def
makeVariantcalling
(
multisample
:
Boolean
=
false
)
:
ShivaVariantcallingTrait
=
{
override
def
makeVariantcalling
(
multisample
:
Boolean
=
false
)
=
{
if
(
multisample
)
new
ShivaVariantcalling
(
qscript
)
{
override
def
namePrefix
=
"multisample"
override
def
configName
=
"shivavariantcalling"
...
...
public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala
View file @
bf11fd13
...
...
@@ -36,7 +36,7 @@ trait ShivaTrait extends MultisampleMappingTrait with Reference with TargetRegio
}
/** Method to make the variantcalling submodule of shiva */
def
makeVariantcalling
(
multisample
:
Boolean
=
false
)
=
{
def
makeVariantcalling
(
multisample
:
Boolean
=
false
)
:
ShivaVariantcallingTrait
with
QScript
=
{
if
(
multisample
)
new
ShivaVariantcalling
(
qscript
)
{
override
def
namePrefix
=
"multisample"
override
def
configName
:
String
=
"shivavariantcalling"
...
...
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