Commits · e2a873b6046babb67fdde267c7d787e099b89e4a · Mirrors / biopet.biopet

Oct 15, 2015
- Fixed version to single end executables · e2a873b6
  Peter van 't Hof authored 9 years ago
  
  e2a873b6
- Fix picard versions · 99485cfd
  Peter van 't Hof authored 9 years ago
  
  99485cfd
Oct 13, 2015
- Fix MatchError · b3da2df1
  Peter van 't Hof authored 9 years ago
  
  b3da2df1
- Added version check for pipe jobs · 2a67db54
  Peter van 't Hof authored 9 years ago
  
  2a67db54
- Extracted version in a trait · 5688a64d
  Peter van 't Hof authored 9 years ago
  
  5688a64d
- Remove some testing · df83160f
  Peter van 't Hof authored 9 years ago
  
  df83160f
Oct 12, 2015
- Added a thread correction var · f03c70ff
  Peter van 't Hof authored 9 years ago
  
  f03c70ff
- Fixed zipped input files · cb2f2556
  Peter van 't Hof authored 9 years ago
  
  cb2f2556
- Fixed numberChunks in summary · 6f39a8ed
  Peter van 't Hof authored 9 years ago
  
  6f39a8ed
Oct 09, 2015
- Fixed default values · 8dedd28a
  Peter van 't Hof authored 9 years ago
  
  8dedd28a
- Fix zcat for chunking · ca9c7e5c
  Peter van 't Hof authored 9 years ago
  
  ca9c7e5c
- Fix chunking · f4f1f4cb
  Peter van 't Hof authored 9 years ago
  
  f4f1f4cb
- style changes, bamMetrics changed in bammetrics · 9c71efa3
  Sander van der Zeeuw authored 9 years ago
  
  9c71efa3
Oct 08, 2015
- added bam metrics for filtered file · cfdfd0b9
  Sander van der Zeeuw authored 9 years ago
  
  cfdfd0b9
- Added samtoolsview options to fixedvalues · e93bf522
  Peter van 't Hof authored 9 years ago
  
  e93bf522
Oct 07, 2015
- Move lost file · ce8ecffb
  Peter van 't Hof authored 9 years ago
  
  ce8ecffb
Oct 06, 2015
- Moved a lost file · 78628451
  Peter van 't Hof authored 9 years ago
  
  78628451
- raise even more memory · ae622b72
  Peter van 't Hof authored 9 years ago
  
  ae622b72
- import deps · c73d6b1d
  Sander van der Zeeuw authored 9 years ago
  
  c73d6b1d
- add BuildBamIndex to biopet · 1df0636d
  Sander van der Zeeuw authored 9 years ago
  
  1df0636d
- added mapping qual filter to Carp · 95b665ed
  Sander van der Zeeuw authored 9 years ago
  
  95b665ed
- Fixed tests in flexiprep · 95ae061e
  Peter van 't Hof authored 9 years ago
  
  95ae061e
- Raised some memory · e404aa7b
  Peter van 't Hof authored 9 years ago
  
  e404aa7b
- Always execute fastqc_qc · 85f7eb91
  Peter van 't Hof authored 9 years ago
  
  85f7eb91
- Added adapters to summary · 2d241e33
  Peter van 't Hof authored 9 years ago
  
  2d241e33
- Fix typo · 66f700a2
  Wai Yi Leung authored 9 years ago
  
  66f700a2
Oct 05, 2015
- Fix errornous foldername · bd2629fe
  Wai Yi Leung authored 9 years ago
  
  bd2629fe
- Removed out commented tests · b733ff34
  Peter van 't Hof authored 9 years ago
  
  b733ff34
- Moved doc to scala docs · ea03623c
  Peter van 't Hof authored 9 years ago
  
  ea03623c
- Added scala docs · 31344c21
  Peter van 't Hof authored 9 years ago
  
  31344c21
- Improved error handeling on executable check · e74cdf5b
  Peter van 't Hof authored 9 years ago
  
  e74cdf5b
- Remove useless lines · 31822f0a
  Peter van 't Hof authored 9 years ago
  
  31822f0a
- Fix single end dependency · 936e77a0
  Peter van 't Hof authored 9 years ago
  
  936e77a0
Oct 02, 2015
- Fix code style warnings · 52928227
  Peter van 't Hof authored 9 years ago
  
  52928227
- Removed zcat step · 699c7baf
  Peter van 't Hof authored 9 years ago
  
  699c7baf
- Move input for gzip to stdin to not remove file · 2156f192
  Peter van 't Hof authored 9 years ago
  
  2156f192
- Fixed graph issue · 47b02b54
  Peter van 't Hof authored 9 years ago
  
  47b02b54
- Fixed summary files of flexiprep · 5d5c30c1
  Peter van 't Hof authored 9 years ago
  
  5d5c30c1
- Fixed issue · a7da2f6a
  Peter van 't Hof authored 9 years ago
  
  a7da2f6a
Oct 01, 2015
- Fix for #210 · 3c228abe
  Peter van 't Hof authored 9 years ago
  
  (cherry picked from commit 910074b8)
  3c228abe