Commits · 55b5629dd31921a81c7ae35211a19af29f7535a2 · Mirrors / biopet.biopet

Dec 23, 2015
- Added function to convert kraken to krona output · 55b5629d
  Peter van 't Hof authored 9 years ago
  
  55b5629d
Dec 18, 2015
- Added tool for merging otu maps · 0b1fec3f
  Peter van 't Hof authored 9 years ago
  
  0b1fec3f
- Added properties for debuging · d6694b38
  Peter van 't Hof authored 9 years ago
  
  d6694b38
- Add settings · 86e7d090
  Peter van 't Hof authored 9 years ago
  
  86e7d090
- Fixed double flexiprep · 8acebe9a
  Peter van 't Hof authored 9 years ago
  
  8acebe9a
- Remove unneeded if statement · d7984e09
  Peter van 't Hof authored 9 years ago
  
  d7984e09
- Fixed sample and lib id for flexiprep · 5aa027a2
  Peter van 't Hof authored 9 years ago
  
  5aa027a2
- Fix sample IDs · 67db8906
  Peter van 't Hof authored 9 years ago
  
  67db8906
Dec 17, 2015
- Style fixes · 43100197
  Peter van 't Hof authored 9 years ago
  
  43100197
- Switch to sample based analysis · 08070144
  Peter van 't Hof authored 9 years ago
  
  08070144
- Fixed wrong job · c5669b7b
  Peter van 't Hof authored 9 years ago
  
  c5669b7b
- Removed unused import · 6e2abf91
  Peter van 't Hof authored 9 years ago
  
  6e2abf91
- Raise memory · 16e4e0cb
  Peter van 't Hof authored 9 years ago
  
  16e4e0cb
- Adding todo's · 7e27eee9
  Peter van 't Hof authored 9 years ago
  
  7e27eee9
- Added merge of otu tables and maps · 83c0d1ee
  Peter van 't Hof authored 9 years ago
  
  83c0d1ee
- Expose subpipelines · 0a25827e
  Peter van 't Hof authored 9 years ago
  
  0a25827e
- Added output files · 9c1384fb
  Peter van 't Hof authored 9 years ago
  
  9c1384fb
- Added output files · f430f58c
  Peter van 't Hof authored 9 years ago
  
  f430f58c
- Added extension for merge otu maps · 6f21013e
  Peter van 't Hof authored 9 years ago
  
  6f21013e
Dec 16, 2015
- Added extension for merge otu tables · 9698cb6d
  Peter van 't Hof authored 9 years ago
  
  9698cb6d
- Raise default memory · e910b28a
  Peter van 't Hof authored 9 years ago
  
  e910b28a
- Always use -f · 8fd9b095
  Peter van 't Hof authored 9 years ago
  
  8fd9b095
- Fixed outputdir · 4e8e65b2
  Peter van 't Hof authored 9 years ago
  
  4e8e65b2
- Removed unused import · 09ec3169
  Peter van 't Hof authored 9 years ago
  
  09ec3169
- Simplify modules · af8d9361
  Peter van 't Hof authored 9 years ago
  
  af8d9361
- Added closed reference method · c6a89d92
  Peter van 't Hof authored 9 years ago
  
  c6a89d92
- Added extension for clased reference otu picking · 15cd85a4
  Peter van 't Hof authored 9 years ago
  
  15cd85a4
- Adding output files · d222ab7e
  Peter van 't Hof authored 9 years ago
  
  d222ab7e
- Added extension for flash · 0a00efdc
  Peter van 't Hof authored 9 years ago
  
  0a00efdc
- Change default regexes · 283d34e3
  Peter van 't Hof authored 9 years ago
  
  283d34e3
Dec 15, 2015
- Fix wrong metrics addition in BamMetrics · ca59e8ef
  bow authored 9 years ago
  
  The CollectHsMetrics was incorrectly added as the CollectTargetedPcrMetrics. This commit fixes it.
  ca59e8ef
- Refactor match statements · 6c3170cc
  Peter van 't Hof authored 9 years ago
  
  6c3170cc
Dec 14, 2015
- Fixed args for CollectGcBiasMetrics · 4e003490
  Peter van 't Hof authored 9 years ago
  
  4e003490
Dec 11, 2015
- Remove unused import · 59fa2049
  Peter van 't Hof authored 9 years ago
  
  59fa2049
- Fixed typo · 1bf61988
  Peter van 't Hof authored 9 years ago
  
  1bf61988
- Store adapter stats name in a single variable · 4945f3ce
  bow authored 9 years ago
  
  4945f3ce
- Use correct copyright header for Cutadapt wrapper in Flexiprep · 9bdd6fdd
  bow authored 9 years ago
  
  9bdd6fdd
- fixed import · 910c0048
  Peter van 't Hof authored 9 years ago
  
  910c0048
- fixed flexiprep summary · 2755d09a
  Peter van 't Hof authored 9 years ago
  
  2755d09a
- Added report · 5d9c7d3a
  Peter van 't Hof authored 9 years ago
  
  5d9c7d3a