Commit 8acebe9a authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fixed double flexiprep

parent d7984e09
......@@ -74,7 +74,7 @@ class GearsSingle(val root: Configurable) extends QScript with SummaryQScript wi
}
protected def executeFlexiprep(r1: File, r2: Option[File]): (File, Option[File]) = {
if (config("skip_flexiprep", default = false)) {
if (!config("skip_flexiprep", default = false).asBoolean) {
val flexiprep = new Flexiprep(this)
flexiprep.input_R1 = r1
flexiprep.input_R2 = r2
......
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