Fixed sample and lib id for flexiprep

5aa027a2 · Peter van 't Hof · 67db8906 · 5aa027a2
Commit 5aa027a2 authored Dec 18, 2015 by Peter van 't Hof
--- a/public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/Gears.scala
+++ b/public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/Gears.scala
@@ -86,7 +86,9 @@ class Gears(val root: Configurable) extends QScript with MultiSampleQScript { qs

    class Library(libId: String) extends AbstractLibrary(libId) {

-      val flexiprep = new Flexiprep(qscript)
+      lazy val flexiprep = new Flexiprep(qscript)
+      flexiprep.sampleId = Some(sampleId)
+      flexiprep.libId = Some(libId)
      flexiprep.input_R1 = config("R1")
      flexiprep.input_R2 = config("R2")
      flexiprep.outputDir = new File(libDir, "flexiprep")