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biopet.biopet
Commits
5aa027a2
Commit
5aa027a2
authored
Dec 18, 2015
by
Peter van 't Hof
Browse files
Fixed sample and lib id for flexiprep
parent
67db8906
Changes
1
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public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/Gears.scala
View file @
5aa027a2
...
...
@@ -86,7 +86,9 @@ class Gears(val root: Configurable) extends QScript with MultiSampleQScript { qs
class
Library
(
libId
:
String
)
extends
AbstractLibrary
(
libId
)
{
val
flexiprep
=
new
Flexiprep
(
qscript
)
lazy
val
flexiprep
=
new
Flexiprep
(
qscript
)
flexiprep
.
sampleId
=
Some
(
sampleId
)
flexiprep
.
libId
=
Some
(
libId
)
flexiprep
.
input_R1
=
config
(
"R1"
)
flexiprep
.
input_R2
=
config
(
"R2"
)
flexiprep
.
outputDir
=
new
File
(
libDir
,
"flexiprep"
)
...
...
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