Commit 9c1384fb authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Added output files

parent f430f58c
......@@ -25,6 +25,12 @@ class GearsQiimeClosed(val root: Configurable) extends QScript with BiopetQScrip
require(fastqR1 != null)
}
private var _otuMap: File = _
def otuMap = _otuMap
private var _otuTable: File = _
def otuTable = _otuTable
def biopetScript() = {
val fastqFile = fastqR2 match {
......@@ -48,5 +54,7 @@ class GearsQiimeClosed(val root: Configurable) extends QScript with BiopetQScrip
closedReference.inputFasta = splitLib.outputSeqs
closedReference.outputDir = new File(outputDir, "pick_closed_reference_otus")
add(closedReference)
_otuMap = closedReference.otuMap
_otuTable = closedReference.otuTable
}
}
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