Commit f430f58c authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Added output files

parent 6f21013e
......@@ -36,9 +36,14 @@ class PickClosedReferenceOtus(val root: Configurable) extends BiopetCommandLineF
var print_only: Boolean = config("print_only", default = false)
var suppress_taxonomy_assignment: Boolean = config("suppress_taxonomy_assignment", default = false)
def otuTable = new File(outputDir, "otu_table.biom")
def otuMap = new File(outputDir, "uclust_ref_picked_otus" + File.separator + "seqs_otus.txt")
override def beforeGraph(): Unit = {
super.beforeGraph()
jobOutputFile = new File(outputDir, "std.log")
jobOutputFile = new File(outputDir, ".std.out")
outputFiles ::= otuTable
outputFiles ::= otuMap
}
def cmdLine = executable + required("-f") +
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment