Commits · 487324b4dea7a88dea17ae3ad539af69d695ee04 · Mirrors / biopet.biopet

Oct 19, 2015
- Add error message when a Flexiprep input file does not have the expected structure · 487324b4
  bow authored 9 years ago
  
  487324b4
- Refactor filename and extension retrieval in Flexiprep · b4b6785a
  bow authored 9 years ago
  
  b4b6785a
Oct 16, 2015
- Limit memory for each test thread · 11579c5d
  Peter van 't Hof authored 9 years ago
  
  11579c5d
- Style fix · c6ebdcae
  Peter van 't Hof authored 9 years ago
  
  c6ebdcae
Oct 15, 2015
- Gentrap test are now divided over 7 threads · 9cae1c11
  Peter van 't Hof authored 9 years ago
  
  9cae1c11
- Rename file · f8785ed4
  Peter van 't Hof authored 9 years ago
  
  f8785ed4
- Remove some test and optimize code · c0d8c129
  Peter van 't Hof authored 9 years ago
  
  c0d8c129
- Each aligner has his own class now · 08bcca4d
  Peter van 't Hof authored 9 years ago
  
  08bcca4d
- Remove "reference" from testing · f4fb8907
  Peter van 't Hof authored 9 years ago
  
  (cherry picked from commit 8bf162ad)
  f4fb8907
Oct 13, 2015
- Remove some testing · df83160f
  Peter van 't Hof authored 9 years ago
  
  df83160f
Oct 12, 2015
- Added a thread correction var · f03c70ff
  Peter van 't Hof authored 9 years ago
  
  f03c70ff
- Fixed zipped input files · cb2f2556
  Peter van 't Hof authored 9 years ago
  
  cb2f2556
- Fixed numberChunks in summary · 6f39a8ed
  Peter van 't Hof authored 9 years ago
  
  6f39a8ed
Oct 09, 2015
- Fixed default values · 8dedd28a
  Peter van 't Hof authored 9 years ago
  
  8dedd28a
- Fix zcat for chunking · ca9c7e5c
  Peter van 't Hof authored 9 years ago
  
  ca9c7e5c
- Fix chunking · f4f1f4cb
  Peter van 't Hof authored 9 years ago
  
  f4f1f4cb
- style changes, bamMetrics changed in bammetrics · 9c71efa3
  Sander van der Zeeuw authored 9 years ago
  
  9c71efa3
Oct 08, 2015
- added bam metrics for filtered file · cfdfd0b9
  Sander van der Zeeuw authored 9 years ago
  
  cfdfd0b9
- Added samtoolsview options to fixedvalues · e93bf522
  Peter van 't Hof authored 9 years ago
  
  e93bf522
Oct 07, 2015
- Fix small bug · 55c9af30
  Peter van 't Hof authored 9 years ago
  
  55c9af30
- Move lost file · ce8ecffb
  Peter van 't Hof authored 9 years ago
  
  ce8ecffb
Oct 06, 2015
- Moved a lost file · 78628451
  Peter van 't Hof authored 9 years ago
  
  78628451
- raise even more memory · ae622b72
  Peter van 't Hof authored 9 years ago
  
  ae622b72
- import deps · c73d6b1d
  Sander van der Zeeuw authored 9 years ago
  
  c73d6b1d
- add BuildBamIndex to biopet · 1df0636d
  Sander van der Zeeuw authored 9 years ago
  
  1df0636d
- added mapping qual filter to Carp · 95b665ed
  Sander van der Zeeuw authored 9 years ago
  
  95b665ed
- Fixed tests in flexiprep · 95ae061e
  Peter van 't Hof authored 9 years ago
  
  95ae061e
- Raised some memory · e404aa7b
  Peter van 't Hof authored 9 years ago
  
  e404aa7b
- Always execute fastqc_qc · 85f7eb91
  Peter van 't Hof authored 9 years ago
  
  85f7eb91
- Added adapters to summary · 2d241e33
  Peter van 't Hof authored 9 years ago
  
  2d241e33
- Fix typo · 66f700a2
  Wai Yi Leung authored 9 years ago
  
  66f700a2
Oct 05, 2015
- Fix errornous foldername · bd2629fe
  Wai Yi Leung authored 9 years ago
  
  bd2629fe
- Removed out commented tests · b733ff34
  Peter van 't Hof authored 9 years ago
  
  b733ff34
- Moved doc to scala docs · ea03623c
  Peter van 't Hof authored 9 years ago
  
  ea03623c
- Added scala docs · 31344c21
  Peter van 't Hof authored 9 years ago
  
  31344c21
- Improved error handeling on executable check · e74cdf5b
  Peter van 't Hof authored 9 years ago
  
  e74cdf5b
- Remove useless lines · 31822f0a
  Peter van 't Hof authored 9 years ago
  
  31822f0a
- Fix single end dependency · 936e77a0
  Peter van 't Hof authored 9 years ago
  
  936e77a0
Oct 02, 2015
- Fix code style warnings · 52928227
  Peter van 't Hof authored 9 years ago
  
  52928227
- Removed zcat step · 699c7baf
  Peter van 't Hof authored 9 years ago
  
  699c7baf