Commits · 08bedeee06dba553f2c768e7f696a603baeff629 · Mirrors / biopet.biopet

Feb 21, 2016
- Added basic unit tests to sv calling · 08bedeee
  Peter van 't Hof authored 9 years ago
  
  08bedeee
Feb 12, 2016
- Simplyfy additional sections · 8215133a
  Peter van 't Hof authored 9 years ago
  
  8215133a
Feb 07, 2016
- Fix order is sections · 1fe8c904
  Peter van 't Hof authored 9 years ago
  
  1fe8c904
Jan 20, 2016
- typo · 6073f6aa
  Sander van der Zeeuw authored 9 years ago
  
  6073f6aa
Jan 19, 2016
- Fixed unit tests · 30696cab
  Peter van 't Hof authored 9 years ago
  
  30696cab
- Added varscan_jar to test config · dd9a7060
  Peter van 't Hof authored 9 years ago
  
  dd9a7060
- Fixed style · 8b099b94
  Peter van 't Hof authored 9 years ago
  
  8b099b94
- add varscan test to shiva variantcalling test · 86ad2593
  Sander van der Zeeuw authored 9 years ago
  
  86ad2593
- move varscan wrapper to extensions · ca40d875
  Sander van der Zeeuw authored 9 years ago
  
  ca40d875
Jan 18, 2016
- changes to get rid of reference calls · bb46c239
  Sander van der Zeeuw authored 9 years ago
  
  bb46c239
- delete file name file on exit of pipeline · 59923a55
  Sander van der Zeeuw authored 9 years ago
  
  59923a55
- change sample name in varscan vcf · 64325f97
  Sander van der Zeeuw authored 9 years ago
  
  64325f97
- remove function removeEmptyPile() · a35c3c9c
  Sander van der Zeeuw authored 9 years ago
  
  a35c3c9c
- added fix mpileup.py scripts to scripts dir in shiva · 7a5e1b5c
  Sander van der Zeeuw authored 9 years ago
  
  7a5e1b5c
- added fixmpileup script and removeEmptypile function · 328be9a6
  Sander van der Zeeuw authored 9 years ago
  
  328be9a6
Jan 15, 2016
- generate dir for varscan · c22edcf3
  Sander van der Zeeuw authored 9 years ago
  
  c22edcf3
- add varscan to shiva variantcallers · 559881ed
  Sander van der Zeeuw authored 9 years ago
  
  559881ed
Jan 12, 2016
- Fix reference tag · 81d36084
  Peter van 't Hof authored 9 years ago
  
  81d36084
- Fixed report types · 9034e179
  Peter van 't Hof authored 9 years ago
  
  9034e179
Jan 11, 2016
- Change gentrap report to multisample mapping report · 56766d98
  Peter van 't Hof authored 9 years ago
  
  56766d98
- Switch shiva to general multisample report · b0f9d027
  Peter van 't Hof authored 9 years ago
  
  b0f9d027
- Remove outdated todo · d79733d1
  Peter van 't Hof authored 9 years ago
  
  d79733d1
Jan 10, 2016
- Fixed type · bf11fd13
  Peter van 't Hof authored 9 years ago
  
  bf11fd13
Jan 08, 2016
- Code improvement · 26f84c6a
  Peter van 't Hof authored 9 years ago
  
  26f84c6a
Jan 06, 2016
- Moved summaryFile · 4143a145
  Peter van 't Hof authored 9 years ago
  
  4143a145
Dec 28, 2015
- Fix format · 4078fca2
  Peter van 't Hof authored 9 years ago
  
  4078fca2
- Fixed traits · 7accfa72
  Peter van 't Hof authored 9 years ago
  
  7accfa72
- Remove redudant summary entry · 00a7a89a
  Peter van 't Hof authored 9 years ago
  
  00a7a89a
Dec 22, 2015
- Switch shiva to multisample mapping · b1e56b71
  Peter van 't Hof authored 9 years ago
  
  b1e56b71
Dec 11, 2015
- Fixed typo · 1bf61988
  Peter van 't Hof authored 9 years ago
  
  1bf61988
Dec 03, 2015
- Added plot · 27b892e6
  Peter van 't Hof authored 9 years ago
  
  27b892e6
- Fixed wrong tag · 692208f2
  Peter van 't Hof authored 9 years ago
  
  692208f2
Nov 29, 2015
- Added index to vt jobs · 6cb4dcbe
  Peter van 't Hof authored 9 years ago
  
  6cb4dcbe
- Fixed md5sums · 3f7a6044
  Peter van 't Hof authored 9 years ago
  
  3f7a6044
Nov 26, 2015
- Fix vcf stats · 7aeda35f
  Peter van 't Hof authored 9 years ago
  
  7aeda35f
Nov 25, 2015
- Style fixes · 02639191
  Peter van 't Hof authored 9 years ago
  
  02639191
- Move mini pipeline delly · 05233c6b
  Peter van 't Hof authored 9 years ago
  
  05233c6b
- Remove whitespace · f64fad3c
  Peter van 't Hof authored 9 years ago
  
  f64fad3c
Nov 24, 2015
- Fixed outputDirs · 946ea4c2
  Peter van 't Hof authored 9 years ago
  
  946ea4c2
- Convert breakdancer to sub pipeline of shiva · 60fc26c3
  Peter van 't Hof authored 9 years ago
  
  60fc26c3