Commit c22edcf3 authored by Sander van der Zeeuw's avatar Sander van der Zeeuw
Browse files

generate dir for varscan

parent 559881ed
......@@ -36,6 +36,7 @@ class VarscanCnsSingleSample(val root: Configurable) extends Variantcaller {
val sampleVcf = new File(outputDir, s"${name}_$sample.vcf.gz")
val sampleFile = new File(outputDir, s"$sample.name.txt")
sampleFile.getParentFile.mkdirs()
sampleFile.deleteOnExit()
val writer = new PrintWriter(sampleFile)
writer.println(sample)
......
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