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biopet.biopet
Commits
c22edcf3
Commit
c22edcf3
authored
Jan 15, 2016
by
Sander van der Zeeuw
Browse files
generate dir for varscan
parent
559881ed
Changes
1
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public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/VarscanCnsSingleSample.scala
View file @
c22edcf3
...
...
@@ -36,6 +36,7 @@ class VarscanCnsSingleSample(val root: Configurable) extends Variantcaller {
val
sampleVcf
=
new
File
(
outputDir
,
s
"${name}_$sample.vcf.gz"
)
val
sampleFile
=
new
File
(
outputDir
,
s
"$sample.name.txt"
)
sampleFile
.
getParentFile
.
mkdirs
()
sampleFile
.
deleteOnExit
()
val
writer
=
new
PrintWriter
(
sampleFile
)
writer
.
println
(
sample
)
...
...
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