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biopet.biopet
Commits
8b099b94
Commit
8b099b94
authored
Jan 19, 2016
by
Peter van 't Hof
Browse files
Fixed style
parent
86ad2593
Changes
2
Hide whitespace changes
Inline
Side-by-side
public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/VarscanCnsSingleSample.scala
View file @
8b099b94
...
...
@@ -5,7 +5,7 @@ import java.io.PrintWriter
import
nl.lumc.sasc.biopet.extensions.gatk.CombineVariants
import
nl.lumc.sasc.biopet.extensions.samtools.SamtoolsMpileup
import
nl.lumc.sasc.biopet.extensions.varscan.
{
FixMpileup
,
VarscanMpileup2cns
}
import
nl.lumc.sasc.biopet.extensions.
{
Bgzip
,
Tabix
}
import
nl.lumc.sasc.biopet.extensions.
{
Bgzip
,
Tabix
}
import
nl.lumc.sasc.biopet.utils.config.Configurable
/**
...
...
public/shiva/src/test/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcallingTest.scala
View file @
8b099b94
...
...
@@ -64,7 +64,7 @@ class ShivaVariantcallingTest extends TestNGSuite with Matchers {
raw
:
Boolean
,
bcftools
:
Boolean
,
bcftoolsSinglesample
:
Boolean
,
freebayes
:
Boolean
,
freebayes
:
Boolean
,
varscanCnsSinglesample
:
Boolean
)
=
{
val
callers
:
ListBuffer
[
String
]
=
ListBuffer
()
if
(
raw
)
callers
.
append
(
"raw"
)
...
...
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