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biopet.biopet
Commits
64325f97
Commit
64325f97
authored
Jan 18, 2016
by
Sander van der Zeeuw
Browse files
change sample name in varscan vcf
parent
a35c3c9c
Changes
1
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Inline
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public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/VarscanCnsSingleSample.scala
View file @
64325f97
...
...
@@ -52,7 +52,7 @@ class VarscanCnsSingleSample(val root: Configurable) extends Variantcaller {
}
val
varscan
=
new
VarscanMpileup2cns
(
this
)
varscan
.
vcfSampleList
=
Some
(
sample
Vcf
)
varscan
.
vcfSampleList
=
Some
(
sample
File
)
add
(
mpileup
|
fixMpileup
|
varscan
|
new
Bgzip
(
this
)
>
sampleVcf
)
add
(
Tabix
(
this
,
sampleVcf
))
...
...
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