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559881ed

Commit 559881ed authored 9 years ago by Sander van der Zeeuw

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add varscan to shiva variantcallers

parent 9e62862f

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Changes 4

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public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/varscan/VarscanMpileup2cns.scala 14 additions, 19 deletions

...c/sasc/biopet/extensions/varscan/VarscanMpileup2cns.scala
public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/extensions/CustomVarScan.scala 2 additions, 2 deletions

...c/biopet/pipelines/gentrap/extensions/CustomVarScan.scala
public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcallingTrait.scala 6 additions, 1 deletion

...asc/biopet/pipelines/shiva/ShivaVariantcallingTrait.scala
public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/VarscanCnsSingleSample.scala 63 additions, 0 deletions

...pelines/shiva/variantcallers/VarscanCnsSingleSample.scala

with 85 additions and 22 deletions

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