Commits · daf19317d6f5aafc4e156910393f8bf02c012199 · biowdl / tasks

Nov 09, 2022
- remove second breakends in gridss AnnotateSvTypes script · daf19317
  Cats authored 2 years ago
  
  daf19317
Aug 22, 2022
- Use gebibytes instead of gigabytes · 8993b5c6
  Ruben Vorderman authored 2 years ago
  
  8993b5c6
Jul 04, 2022
- Add GT to gridss results in AnnotateSvTypes · 0f3cb30d
  Cats authored 2 years ago
  
  0f3cb30d
Jun 30, 2022
- fix duoble .bgz and and index to output · 358c946d
  Cats authored 2 years ago
  
  358c946d
- detect if compressed · 4e2a09e1
  Cats authored 2 years ago
  
  4e2a09e1
- fix output name · 39af0ad7
  Cats authored 2 years ago
  
  39af0ad7
- fix heredoc · 01aa41d2
  Cats authored 2 years ago
  
  01aa41d2
Jun 17, 2022
- adjust some runtime settings · 873ece6f
  Cats authored 2 years ago
  
  873ece6f
Jun 16, 2022
- adjust gridss threads · bd153caa
  Cats authored 2 years ago
  
  bd153caa
Apr 08, 2022
- typo · 1b4238c6
  Cats authored 2 years ago
  
  1b4238c6
- copy paste error · 87bb3c4f
  Cats authored 2 years ago
  
  87bb3c4f
- add task for sv type annotation of gridss results · 1c02ce1e
  Cats authored 2 years ago
  
  1c02ce1e
Mar 18, 2022
- run tabix if vcf index is missing in gridss · ac55982a
  Cats authored 3 years ago
  
  ac55982a
Jan 28, 2022
- add missing parameter_meta · f234b0e8
  Cats authored 3 years ago
  
  f234b0e8
Jan 19, 2022
- increase resources GRIDSS · 89a0324a
  Cats authored 3 years ago
  
  89a0324a
Nov 26, 2021
- give dictionary and index to virusbreakend · 787ad56b
  Cats authored 3 years ago
  
  787ad56b
Nov 13, 2021
- gridss more memory · d3d20400
  Cats authored 3 years ago
  
  d3d20400
Nov 12, 2021
- change gridss runtime settings · 1a9a8058
  Cats authored 3 years ago
  
  1a9a8058
- use alternative gridss image for virusbreakend · f64bd536
  Cats authored 3 years ago
  
  f64bd536
- increase gridss memory · c9657636
  Cats authored 3 years ago
  
  c9657636
Nov 11, 2021
- increase memory gridss · f9ed6158
  Cats authored 3 years ago
  
  f9ed6158
Nov 10, 2021
- upgrade gridss to 2.12.2 · 7d1f9c92
  Cats authored 3 years ago
  
  7d1f9c92
Nov 09, 2021
- try version 2.11.1 for gridss · 0a1995df
  Cats authored 3 years ago
  
  0a1995df
Nov 08, 2021
- add img input for virusbreakend · 9e868dbc
  Cats authored 3 years ago
  
  9e868dbc
Sep 24, 2021
- adjust resource settings · a7a504e4
  Cats authored 3 years ago
  
  a7a504e4
Jul 08, 2021
- typo · d28a2a52
  Cats authored 3 years ago
  
  d28a2a52
- fix wrong placeholder · 28b1a835
  Cats authored 3 years ago
  
  28b1a835
- fix Xmx in AnnotateInsertedSequence · c8040213
  Cats authored 3 years ago
  
  c8040213
Jul 07, 2021
- add threads to repeatmasker · 9d3b5a55
  Cats authored 3 years ago
  
  9d3b5a55
- increase memory repeatmasker · 4a32a443
  Cats authored 3 years ago
  
  4a32a443
Jul 05, 2021
- increase time for GridssAnnotateVcfRepeatmasker · 477f00f5
  Cats authored 3 years ago
  
  477f00f5
Jul 02, 2021
- adjust repeatmasker time · 497f12a7
  Cats authored 3 years ago
  
  497f12a7
- set default timeMinutes GridssAnnotateVcfRepeatmasker to 120 · 7c5ce8c0
  Cats authored 3 years ago
  
  7c5ce8c0
- fix missing backslash · 44a70a39
  Cats authored 3 years ago
  
  44a70a39
Jul 01, 2021
- remove tabix from gridss · 3c92beac
  Cats authored 3 years ago
  
  3c92beac
Jun 28, 2021
- add virusbreakend · 04c65ab3
  Cats authored 3 years ago
  
  04c65ab3
- update some version and add repeatmasker annotation for gridss · 545f63af
  Cats authored 3 years ago
  
  545f63af
May 19, 2021
- adjust runtime settings · 32c08100
  Cats authored 3 years ago
  
  32c08100
Apr 14, 2021
- add gridss properties · a4d5102d
  Cats authored 3 years ago
  
  a4d5102d
Apr 12, 2021
- memory and runtime adjustements · 0862eab3
  Cats authored 3 years ago
  
  0862eab3