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Commit 1a9a8058 authored by Cats's avatar Cats
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change gridss runtime settings

parent f64bd536
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......@@ -34,7 +34,7 @@ task AnnotateInsertedSequence {
Int threads = 8
String javaXmx = "8G"
String memory = "9G"
String dockerImage = "quay.io/biocontainers/gridss:2.12.2--h270b39a_0"
String dockerImage = "quay.io/biowdl/gridss:2.12.2"
Int timeMinutes = 120
}
......@@ -94,9 +94,9 @@ task GRIDSS {
File? gridssProperties
Int jvmHeapSizeGb = 185
Int threads = 8
Int timeMinutes = ceil(4320 / threads) + 10
String dockerImage = "quay.io/biocontainers/gridss:2.12.2--h270b39a_0"
Int threads = 4
Int timeMinutes = ceil(7200 / threads) + 180
String dockerImage = "quay.io/biowdl/gridss:2.12.2"
}
command {
......@@ -165,7 +165,7 @@ task GridssAnnotateVcfRepeatmasker {
String memory = "25G"
Int threads = 8
String dockerImage = "quay.io/biocontainers/gridss:2.12.2--h270b39a_0"
String dockerImage = "quay.io/biowdl/gridss:2.12.2"
Int timeMinutes = 1440
}
......
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