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Commit 9e868dbc authored by Cats's avatar Cats
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add img input for virusbreakend

parent c48f3bb7
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......@@ -207,6 +207,7 @@ task Virusbreakend {
File bam
File bamIndex
File referenceFasta
File referenceImg
File virusbreakendDB
String outputPath = "./virusbreakend.vcf"
......@@ -246,6 +247,7 @@ task Virusbreakend {
bam: {description: "A BAM file.", category: "required"}
bamIndex: {description: "The index for the BAM file.", category: "required"}
referenceFasta: {description: "The fasta of the reference genome.", category: "required"}
referenceImg: {description: "The BWA index image (generated with GATK BwaMemIndexImageCreator) of the reference.", category: "required"}
virusbreakendDB: {description: "A .tar.gz containing the virusbreakend database.", category: "required"}
outputPath: {description: "The path the output should be written to.", category: "common"}
memory: {description: "The amount of memory this job will use.", category: "advanced"}
......
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