fix output name

39af0ad7 · Cats · 01aa41d2 · 39af0ad7
Commit 39af0ad7 authored 2 years ago by Cats
--- a/gridss.wdl
+++ b/gridss.wdl
@@ -83,7 +83,7 @@ task AnnotateSvTypes {
    input {
        File gridssVcf
        File gridssVcfIndex
-        String outputPath = "./gridss.svtyped.vcf"
+        String outputPath = "./gridss.svtyped.vcf.bgz"

        String memory = "32G"
        String dockerImage = "quay.io/biocontainers/bioconductor-structuralvariantannotation:1.10.0--r41hdfd78af_0"