fix wrong placeholder

28b1a835 · Cats · c8040213 · 28b1a835
Commit 28b1a835 authored 3 years ago by Cats
--- a/gridss.wdl
+++ b/gridss.wdl
@@ -40,7 +40,7 @@ task AnnotateInsertedSequence {

    command {
        set -e
-        _JAVA_OPTIONS="${_JAVA_OPTIONS}:-Xmx~{javaXmx}"
+        _JAVA_OPTIONS="$_JAVA_OPTIONS:-Xmx~{javaXmx}"
        AnnotateInsertedSequence \
        REFERENCE_SEQUENCE=~{viralReference} \
        INPUT=~{inputVcf} \