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Commit d28a2a52 authored by Cats's avatar Cats
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typo

parent 28b1a835
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......@@ -35,12 +35,12 @@ task AnnotateInsertedSequence {
String javaXmx = "8G"
String memory = "9G"
String dockerImage = "quay.io/biocontainers/gridss:2.12.0--h270b39a_1"
Int timeMinutes = 1 + ceil(size(inputVcf, "G") * 3 / threads)
Int timeMinutes = 120
}
command {
set -e
_JAVA_OPTIONS="$_JAVA_OPTIONS:-Xmx~{javaXmx}"
_JAVA_OPTIONS="$_JAVA_OPTIONS -Xmx~{javaXmx}"
AnnotateInsertedSequence \
REFERENCE_SEQUENCE=~{viralReference} \
INPUT=~{inputVcf} \
......
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