adjust resource settings

gridss.wdl

@@ -94,7 +94,7 @@ task GRIDSS {
         File? gridssProperties
 
         Int jvmHeapSizeGb = 64
-        Int threads = 4
+        Int threads = 8
         Int timeMinutes = ceil(4320 / threads) + 10
         String dockerImage = "quay.io/biocontainers/gridss:2.12.0--h270b39a_1"
     }
@@ -163,10 +163,10 @@ task GridssAnnotateVcfRepeatmasker {
         File gridssVcfIndex
         String outputPath = "./gridss.repeatmasker_annotated.vcf.gz"
 
-        String memory = "50G"
-        Int threads = 4
+        String memory = "25G"
+        Int threads = 8
         String dockerImage = "quay.io/biocontainers/gridss:2.12.0--h270b39a_1"
-        Int timeMinutes = 2880
+        Int timeMinutes = 1440
     }
 
     command {

hmftools.wdl

@@ -799,10 +799,10 @@ task Sage {
         String? mnvFilterEnabled
         File? coverageBed
 
-        Int threads = 2
+        Int threads = 4
         String javaXmx = "50G"
         String memory = "60G"
-        Int timeMinutes = 1 + ceil(size(select_all([tumorBam, normalBam]), "G") * 8 / threads)
+        Int timeMinutes = 1 + ceil(size(select_all([tumorBam, normalBam]), "G") * 9 / threads)
         String dockerImage = "quay.io/biocontainers/hmftools-sage:2.8--hdfd78af_0"
     }
 

peach.wdl

@@ -30,9 +30,9 @@ task Peach {
         String outputDir = "./peach"
         File panelJson
 
-        String memory = "8G"
+        String memory = "2G"
         String dockerImage = "quay.io/biowdl/peach:v1.0"
-        Int timeMinutes = 20
+        Int timeMinutes = 5
     }
 
     command {