Commits · d79733d12588091dd24823ba2f3408d754c81b02 · Mirrors / biopet.biopet

11 Jan, 2016 5 commits
- Remove outdated todo · d79733d1
  Peter van 't Hof authored Jan 11, 2016
  
  d79733d1
- Added report to multisample mapping · b44d0a54
  Peter van 't Hof authored Jan 11, 2016
  
  b44d0a54
- Move generic pages to multisamplemapping · aa8071f2
  Peter van 't Hof authored Jan 11, 2016
  
  aa8071f2
- Merge branch 'fix-tophat' into 'develop' · 27236df5
  Wai Yi Leung authored Jan 11, 2016
```
Fix output file for tophat step

Still needs testing

See merge request !300
```
  27236df5
- Style fix · 203a0c98
  Peter van 't Hof authored Jan 11, 2016
  
  203a0c98
10 Jan, 2016 1 commit
- Fixed type · bf11fd13
  Peter van 't Hof authored Jan 10, 2016
  
  bf11fd13
08 Jan, 2016 3 commits
- Code improvement · 26f84c6a
  Peter van 't Hof authored Jan 08, 2016
  
  26f84c6a
- Style changes · 96efe61e
  Peter van 't Hof authored Jan 08, 2016
  
  96efe61e
- Fix output file for tophat step · e3fd97af
  Peter van 't Hof authored Jan 08, 2016
  
  e3fd97af
06 Jan, 2016 7 commits
- Merge branch 'feature-multisample_mapping' into 'develop' · d91e8f6f
  Wai Yi Leung authored Jan 06, 2016
```
Multisample mapping pipeline

Fixes #225 

See merge request !292
```
  d91e8f6f
- Merge remote-tracking branch 'remotes/origin/develop' into feature-multisample_mapping · 7d9ff889
  Peter van 't Hof authored Jan 06, 2016
  
  7d9ff889
- Fixed typo · fa4b60f8
  Peter van 't Hof authored Jan 06, 2016
  
  fa4b60f8
- Moved summaryFile · 4143a145
  Peter van 't Hof authored Jan 06, 2016
  
  4143a145
- Merge branch 'feature-sample_tags' into 'develop' · 0beb17fd
  Wai Yi Leung authored Jan 06, 2016
```
Added gender and groups to samples

Fix for #131 

See merge request !296
```
  0beb17fd
- Merge branch 'feature-generate_indexes' into 'develop' · 488594e1
  Wai Yi Leung authored Jan 06, 2016
```
Feature generate indexes

see also #187 

See merge request !211
```
  488594e1
- Merge branch 'feature-unit_tests_core' into 'develop' · 1921f894
  Wai Yi Leung authored Jan 06, 2016
```
Added unit tests to reference trait

Fixes #250

Also implemented improved test aggregation

See merge request !298
```
  1921f894
05 Jan, 2016 5 commits
- Change aggregation · 719d854f
  Peter van 't Hof authored Jan 05, 2016
  
  719d854f
- Fix temp files in mapping · 748dd6c2
  Peter van 't Hof authored Jan 05, 2016
  
  748dd6c2
- Fix scoverage aggregate · e21646ad
  Peter van 't Hof authored Jan 05, 2016
  
  e21646ad
- Fixed executable in test · 9e4144e8
  Peter van 't Hof authored Jan 05, 2016
  
  9e4144e8
- Moved tags to the "tags" key · 5edadca1
  Peter van 't Hof authored Jan 05, 2016
  
  5edadca1
04 Jan, 2016 3 commits
- Merge remote-tracking branch 'remotes/origin/develop' into feature-multisample_mapping · 6e4327e7
  Peter van 't Hof authored Jan 04, 2016
  
  6e4327e7
- Merge branch 'fix-scatter' into 'develop' · 59cdddd6
  bow authored Jan 04, 2016
```
Fixed scattering



See merge request !295
```
  59cdddd6
- Style fixes · 5c0f52d3
  Peter van 't Hof authored Jan 04, 2016
  
  5c0f52d3
30 Dec, 2015 1 commit
- Added unit tests to reference trait · bdadf513
  Peter van 't Hof authored Dec 30, 2015
  
  bdadf513
29 Dec, 2015 9 commits
- Fixed number of jobs · 4b86b485
  Peter van 't Hof authored Dec 29, 2015
  
  4b86b485
- Added testing · ecd3dd97
  Peter van 't Hof authored Dec 29, 2015
  
  ecd3dd97
- Fix createFile method · 22201b39
  Peter van 't Hof authored Dec 29, 2015
  
  22201b39
- Fixed mother and father key · b9f9c369
  Peter van 't Hof authored Dec 29, 2015
  
  b9f9c369
- Start on unit testing MultisampleQScript · 2c7bb613
  Peter van 't Hof authored Dec 29, 2015
  
  2c7bb613
- Fix version · 244653f5
  Peter van 't Hof authored Dec 29, 2015
  
  244653f5
- Move Bowtie2 to package bowtie · 76383bf1
  Peter van 't Hof authored Dec 29, 2015
  
  76383bf1
- Fixed compile errors · 394f32a2
  Peter van 't Hof authored Dec 29, 2015
  
  394f32a2
- Merge remote-tracking branch 'remotes/origin/develop' into feature-generate_indexes · 45fce26a
  Peter van 't Hof authored Dec 29, 2015
```
Conflicts:
	public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/bowtie/Bowtie.scala
	public/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala
```
  45fce26a
28 Dec, 2015 6 commits
- Added whitespace · 28a34d76
  Peter van 't Hof authored Dec 28, 2015
  
  28a34d76
- Added md5 check · 4fd461e8
  Peter van 't Hof authored Dec 28, 2015
  
  4fd461e8
- Fixed merge · b9e823e4
  Peter van 't Hof authored Dec 28, 2015
  
  b9e823e4
- Fixed intermediate files · 330377f0
  Peter van 't Hof authored Dec 28, 2015
  
  330377f0
- Added controls to summary · ee8f8474
  Peter van 't Hof authored Dec 28, 2015
  
  ee8f8474
- Switch Carp to multisample mapping · 801ddf8f
  Peter van 't Hof authored Dec 28, 2015
  
  801ddf8f