Commit 4fd461e8 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Added md5 check

parent b9e823e4
......@@ -83,6 +83,10 @@ trait MultisampleMappingTrait extends MultiSampleQScript
def preProcessBam = bamFile
def addJobs(): Unit = {
inputR1.foreach(inputFiles :+= new InputFile(_, config("R1_md5")))
inputR2.foreach(inputFiles :+= new InputFile(_, config("R2_md5")))
inputBam.foreach(inputFiles :+= new InputFile(_, config("bam_md5")))
if (inputR1.isDefined) {
mapping.foreach { m =>
m.input_R1 = inputR1.get
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