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biopet.biopet
Commits
4fd461e8
Commit
4fd461e8
authored
Dec 28, 2015
by
Peter van 't Hof
Browse files
Added md5 check
parent
b9e823e4
Changes
1
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Inline
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public/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/MultisampleMappingTrait.scala
View file @
4fd461e8
...
...
@@ -83,6 +83,10 @@ trait MultisampleMappingTrait extends MultiSampleQScript
def
preProcessBam
=
bamFile
def
addJobs
()
:
Unit
=
{
inputR1
.
foreach
(
inputFiles
:+=
new
InputFile
(
_
,
config
(
"R1_md5"
)))
inputR2
.
foreach
(
inputFiles
:+=
new
InputFile
(
_
,
config
(
"R2_md5"
)))
inputBam
.
foreach
(
inputFiles
:+=
new
InputFile
(
_
,
config
(
"bam_md5"
)))
if
(
inputR1
.
isDefined
)
{
mapping
.
foreach
{
m
=>
m
.
input_R1
=
inputR1
.
get
...
...
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