Commit b44d0a54 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Added report to multisample mapping

parent aa8071f2
......@@ -15,11 +15,9 @@
*/
package nl.lumc.sasc.biopet.pipelines.carp
import nl.lumc.sasc.biopet.core.report.ReportBuilderExtension
import nl.lumc.sasc.biopet.pipelines.mapping.MultisampleMappingReportTrait
import nl.lumc.sasc.biopet.utils.config.Configurable
import nl.lumc.sasc.biopet.core.report.{ ReportBuilderExtension, ReportSection, ReportPage, MultisampleReportBuilder }
import nl.lumc.sasc.biopet.pipelines.bammetrics.BammetricsReport
import nl.lumc.sasc.biopet.pipelines.flexiprep.FlexiprepReport
/**
* Class for report for CArp
......
......@@ -37,6 +37,13 @@ trait MultisampleMappingTrait extends MultiSampleQScript
addSummaryJobs()
}
override def reportClass = {
val report = new MultisampleMappingReport(this)
report.outputDir = new File(outputDir, "report")
report.summaryFile = summaryFile
Some(report)
}
def addMultiSampleJobs(): Unit = {
// this code will be executed after all code of all samples is executed
}
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment