Added report to multisample mapping

public/carp/src/main/scala/nl/lumc/sasc/biopet/pipelines/carp/CarpReport.scala

@@ -15,11 +15,9 @@
  */
 package nl.lumc.sasc.biopet.pipelines.carp
 
+import nl.lumc.sasc.biopet.core.report.ReportBuilderExtension
 import nl.lumc.sasc.biopet.pipelines.mapping.MultisampleMappingReportTrait
 import nl.lumc.sasc.biopet.utils.config.Configurable
-import nl.lumc.sasc.biopet.core.report.{ ReportBuilderExtension, ReportSection, ReportPage, MultisampleReportBuilder }
-import nl.lumc.sasc.biopet.pipelines.bammetrics.BammetricsReport
-import nl.lumc.sasc.biopet.pipelines.flexiprep.FlexiprepReport
 
 /**
  * Class for report for CArp

public/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/MultisampleMappingTrait.scala

@@ -37,6 +37,13 @@ trait MultisampleMappingTrait extends MultiSampleQScript
     addSummaryJobs()
   }
 
+  override def reportClass = {
+    val report = new MultisampleMappingReport(this)
+    report.outputDir = new File(outputDir, "report")
+    report.summaryFile = summaryFile
+    Some(report)
+  }
+
   def addMultiSampleJobs(): Unit = {
     // this code will be executed after all code of all samples is executed
   }