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biopet.biopet
Commits
b44d0a54
Commit
b44d0a54
authored
Jan 11, 2016
by
Peter van 't Hof
Browse files
Added report to multisample mapping
parent
aa8071f2
Changes
2
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public/carp/src/main/scala/nl/lumc/sasc/biopet/pipelines/carp/CarpReport.scala
View file @
b44d0a54
...
...
@@ -15,11 +15,9 @@
*/
package
nl.lumc.sasc.biopet.pipelines.carp
import
nl.lumc.sasc.biopet.core.report.ReportBuilderExtension
import
nl.lumc.sasc.biopet.pipelines.mapping.MultisampleMappingReportTrait
import
nl.lumc.sasc.biopet.utils.config.Configurable
import
nl.lumc.sasc.biopet.core.report.
{
ReportBuilderExtension
,
ReportSection
,
ReportPage
,
MultisampleReportBuilder
}
import
nl.lumc.sasc.biopet.pipelines.bammetrics.BammetricsReport
import
nl.lumc.sasc.biopet.pipelines.flexiprep.FlexiprepReport
/**
* Class for report for CArp
...
...
public/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/MultisampleMappingTrait.scala
View file @
b44d0a54
...
...
@@ -37,6 +37,13 @@ trait MultisampleMappingTrait extends MultiSampleQScript
addSummaryJobs
()
}
override
def
reportClass
=
{
val
report
=
new
MultisampleMappingReport
(
this
)
report
.
outputDir
=
new
File
(
outputDir
,
"report"
)
report
.
summaryFile
=
summaryFile
Some
(
report
)
}
def
addMultiSampleJobs
()
:
Unit
=
{
// this code will be executed after all code of all samples is executed
}
...
...
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