Commits · a5bf52fd5524f73a2bb5083ca410bc9fd4f24356 · Mirrors / biopet.biopet

Feb 02, 2016
- Remove outputDir as output file · 3095b900
  Peter van 't Hof authored 9 years ago
  
  3095b900
- fixed output file of basecounter · 8a1dfa17
  Peter van 't Hof authored 9 years ago
  
  8a1dfa17
Jan 29, 2016
- Added meta exon counts to pipeline · c294fbef
  Peter van 't Hof authored 9 years ago
  
  c294fbef
Jan 27, 2016
- Give mergeTables a extension · 0e7a025e
  Peter van 't Hof authored 9 years ago
  
  0e7a025e
Jan 25, 2016
- Optimize imports · 4024e04f
  Peter van 't Hof authored 9 years ago
  
  4024e04f
Jan 23, 2016
- Added tool extension · 43955a2f
  Peter van 't Hof authored 9 years ago
  
  43955a2f
Jan 20, 2016
- Added cufflinks · de64cd6b
  Peter van 't Hof authored 9 years ago
  
  de64cd6b
- Added general merging · d411daac
  Peter van 't Hof authored 9 years ago
  
  d411daac
Dec 18, 2015
- Added tool for merging otu maps · 0b1fec3f
  Peter van 't Hof authored 9 years ago
  
  0b1fec3f
Nov 30, 2015
- Fixed vcf index files · 55629dcb
  Peter van 't Hof authored 9 years ago
  
  55629dcb
Nov 24, 2015
- Bump version to 0.6.0-SNAPSHOT · ac785920
  Peter van 't Hof authored 9 years ago
  
  ac785920
- Bump version to 0.5.0 · c5303e8c
  Peter van 't Hof authored 9 years ago
  
  c5303e8c
Nov 23, 2015
- Bump to 0.5.0-RC2 · 16d2711f
  Peter van 't Hof authored 9 years ago
  
  16d2711f
Nov 20, 2015
- Added vcf stats for each region bed file · 991c07af
  Peter van 't Hof authored 9 years ago
  
  991c07af
Nov 19, 2015
- Bumb version to 0.5.0-RC1 · 19a93bbb
  Peter van 't Hof authored 9 years ago
  
  19a93bbb
- Fixed license headers · fceb39a9
  Peter van 't Hof authored 9 years ago
  
  fceb39a9
Oct 30, 2015
- Raise memory · 128e3f39
  Peter van 't Hof authored 9 years ago
  
  128e3f39
Oct 29, 2015
- Fixed summary file name · 2f92eb6d
  Peter van 't Hof authored 9 years ago
  
  2f92eb6d
Oct 28, 2015
- Adding Scaladocs to KrakenReportToJson and remove redundant code · 4cb2adf1
  Wai Yi Leung authored 9 years ago
  
  4cb2adf1
Oct 27, 2015
- Code style fixes · 41eade8b
  Peter van 't Hof authored 9 years ago
  
  41eade8b
Oct 23, 2015
- fix compile error · 035f43f7
  Sander Bollen authored 9 years ago
  
  035f43f7
Oct 22, 2015
- Sync with develop changes · a2a08716
  Wai Yi Leung authored 9 years ago
  
  a2a08716
Oct 21, 2015
- Fix typo of trait class ToolCommandFuntion -> ToolCommandFunction #221 · 6e7eeb41
  Wai Yi Leung authored 9 years ago
  
  6e7eeb41
- Fix markup in code · 73033e0d
  Wai Yi Leung authored 9 years ago
  73033e0d
Oct 19, 2015
- Style update by IDEA · caf77b81
  Wai Yi Leung authored 9 years ago
  
  caf77b81
- Updated krakentojson report and enforce check-names with-in Kraken · d82b56a0
  Wai Yi Leung authored 9 years ago
  
  d82b56a0
Oct 15, 2015
- added proper piping to bcftools and mpileup. [GENTRAP VARSCAN SHOULD BE TESTED] · 76da8883
  Sander van der Zeeuw authored 9 years ago
  
  76da8883
- dependency graph is now correct · 4ae4de0e
  Sander Bollen authored 9 years ago
  
  4ae4de0e
Oct 13, 2015
- fix tiny bug and style · c1a88f57
  Sander Bollen authored 9 years ago
  
  c1a88f57
- varda in Toucan · 7c308613
  Sander Bollen authored 9 years ago
  
  7c308613
Oct 06, 2015
- Change commandLine to cmdLine according to the new specs · f5f8ead7
  Wai Yi Leung authored 9 years ago
  
  f5f8ead7
- Adding files to summary json · 4350c5b5
  Wai Yi Leung authored 9 years ago
  
  4350c5b5
Oct 05, 2015
- Add extension wrapper for biopet, Allow to skipNames in reporting for concise... · b674053a
  Wai Yi Leung authored 9 years ago
  b674053a
- Moved doc to scala docs · ea03623c
  Peter van 't Hof authored 9 years ago
  
  ea03623c
Sep 29, 2015
- Switch to fifo pipes · 8ae539f7
  Peter van 't Hof authored 9 years ago
  
  8ae539f7
Sep 28, 2015
- Fixed resources · 6fc77a78
  Peter van 't Hof authored 9 years ago
  
  6fc77a78
Sep 24, 2015
- Added FilePipes · 04210893
  Peter van 't Hof authored 9 years ago
  
  04210893
Sep 23, 2015
- Added support to have a pipe as input file · f298fe2c
  Peter van 't Hof authored 9 years ago
  
  f298fe2c
Sep 18, 2015
- Fixed unit tests · 6c7f4701
  Peter van 't Hof authored 9 years ago
  
  6c7f4701
- Sync with develop and fix build issues · c1f9f9e8
  Peter van 't Hof authored 9 years ago
  
  c1f9f9e8