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f298fe2c

Commit f298fe2c authored 9 years ago by Peter van 't Hof

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Added support to have a pipe as input file

parent 839b0c12

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Changes 4

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public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/FastqSync.scala 22 additions, 7 deletions

...cala/nl/lumc/sasc/biopet/extensions/tools/FastqSync.scala
public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala 14 additions, 9 deletions

...a/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/QcCommand.scala 3 additions, 0 deletions

...a/nl/lumc/sasc/biopet/pipelines/flexiprep/QcCommand.scala
public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/Gears.scala 2 additions, 2 deletions

...ain/scala/nl/lumc/sasc/biopet/pipelines/gears/Gears.scala

with 41 additions and 18 deletions

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