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55629dcb

Commit 55629dcb authored 9 years ago by Peter van 't Hof

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Fixed vcf index files

parent 0929d425

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protected/biopet-gatk-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/UnifiedGenotyper.scala 19 additions, 0 deletions

.../sasc/biopet/extensions/gatk/broad/UnifiedGenotyper.scala
protected/biopet-gatk-pipelines/src/main/scala/nl/lumc/sasc/biopet/pipelines/gatk/variantcallers/UnifiedGenotyper.scala 2 additions, 3 deletions

...opet/pipelines/gatk/variantcallers/UnifiedGenotyper.scala
protected/biopet-gatk-pipelines/src/main/scala/nl/lumc/sasc/biopet/pipelines/gatk/variantcallers/UnifiedGenotyperAllele.scala 2 additions, 3 deletions

...ipelines/gatk/variantcallers/UnifiedGenotyperAllele.scala
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/MpileupToVcf.scala 4 additions, 0 deletions

...a/nl/lumc/sasc/biopet/extensions/tools/MpileupToVcf.scala
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/VcfFilter.scala 8 additions, 0 deletions

...cala/nl/lumc/sasc/biopet/extensions/tools/VcfFilter.scala

with 35 additions and 6 deletions

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