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d82b56a0

Commit d82b56a0 authored 9 years ago by Wai Yi Leung

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Updated krakentojson report and enforce check-names with-in Kraken

parent ceaa8fd0

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public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/kraken/Kraken.scala 1 addition, 7 deletions

.../scala/nl/lumc/sasc/biopet/extensions/kraken/Kraken.scala
public/biopet-extentsions/src/main/scala/nl/lumc/sasc/biopet/extensions/kraken/KrakenReport.scala 2 additions, 2 deletions

.../nl/lumc/sasc/biopet/extensions/kraken/KrakenReport.scala
public/biopet-tools-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/tools/KrakenReportToJson.scala 5 additions, 2 deletions

...umc/sasc/biopet/extensions/tools/KrakenReportToJson.scala
public/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/KrakenReportToJson.scala 4 additions, 1 deletion

.../scala/nl/lumc/sasc/biopet/tools/KrakenReportToJson.scala
public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/Gears.scala 4 additions, 10 deletions

...ain/scala/nl/lumc/sasc/biopet/pipelines/gears/Gears.scala

with 16 additions and 22 deletions

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