Commits · a5bf52fd5524f73a2bb5083ca410bc9fd4f24356 · Mirrors / biopet.biopet

Feb 02, 2016
- Fixed bug in Ln · 53cc2a4d
  Peter van 't Hof authored 9 years ago
  
  53cc2a4d
Jan 29, 2016
- wgs and rna metrics now got config value to enable/disable them · 64134d46
  Peter van 't Hof authored 9 years ago
  
  64134d46
Jan 25, 2016
- Change version command · ae01e8be
  Peter van 't Hof authored 9 years ago
  
  ae01e8be
Jan 20, 2016
- Fix bwa bug using freeVar=false · 42b5a991
  Wai Yi Leung authored 9 years ago
  
  42b5a991
- Revert "PindelVCF wrapper", does not belong to this branch · bba51033
  Wai Yi Leung authored 9 years ago
  bba51033
- PindelVCF wrapper · 2b618795
  Wai Yi Leung authored 9 years ago
  
  2b618795
Jan 19, 2016
- Raise default memory for varscan · 10835803
  Peter van 't Hof authored 9 years ago
  
  10835803
- Added version to varscan · 3f85a446
  Peter van 't Hof authored 9 years ago
  3f85a446
- Added version to varscan · a13b0d1d
  Peter van 't Hof authored 9 years ago
  
  a13b0d1d
- move varscan wrapper to extensions · ca40d875
  Sander van der Zeeuw authored 9 years ago
  
  ca40d875
- Update Cutadapt wrapper and style change (camelCaps instead of _) · 3049d572
  Wai Yi Leung authored 9 years ago
  
  3049d572
Jan 18, 2016
- Update Cutadapt wrapper · 564081d7
  Wai Yi Leung authored 9 years ago
  
  564081d7
Jan 15, 2016
- bgzip piping went wrong fix with if stdout else > · 43748908
  Sander van der Zeeuw authored 9 years ago
  
  43748908
- add varscan to shiva variantcallers · 559881ed
  Sander van der Zeeuw authored 9 years ago
  
  559881ed
Jan 11, 2016
- fix tiny setting · 9fbc2376
  Sander Bollen authored 9 years ago
  
  9fbc2376
Jan 08, 2016
- Style changes · 96efe61e
  Peter van 't Hof authored 9 years ago
  
  96efe61e
- Style fix · a2c4d7bc
  Peter van 't Hof authored 9 years ago
  
  a2c4d7bc
- Fixed rna metrics · 565f3979
  Peter van 't Hof authored 9 years ago
  
  565f3979
Jan 06, 2016
- fix merge request issues · a161a802
  Sander Bollen authored 9 years ago
  
  a161a802
Jan 05, 2016
- merge bed file to prevent massive files · 29ddfee6
  Sander Bollen authored 9 years ago
  
  29ddfee6
Dec 30, 2015
- raise default memory · f45873b6
  Peter van 't Hof authored 9 years ago
  
  f45873b6
Dec 29, 2015
- Move Bowtie2 to package bowtie · 76383bf1
  Peter van 't Hof authored 9 years ago
  
  76383bf1
- Fixed compile errors · 394f32a2
  Peter van 't Hof authored 9 years ago
  
  394f32a2
Dec 28, 2015
- Fixed intermediate files · 330377f0
  Peter van 't Hof authored 9 years ago
  
  330377f0
Dec 22, 2015
- Fix issue #248 · 000db84e
  Peter van 't Hof authored 9 years ago
  
  000db84e
Dec 21, 2015
- Add bam linking · 7501f792
  Peter van 't Hof authored 9 years ago
  
  7501f792
- Adding merge strategies · 10d0ce96
  Peter van 't Hof authored 9 years ago
  
  10d0ce96
Dec 18, 2015
- Fixed args · 182c68fa
  Peter van 't Hof authored 9 years ago
  
  182c68fa
Dec 17, 2015
- Switch to sample based analysis · 08070144
  Peter van 't Hof authored 9 years ago
  
  08070144
- Raise memory · 16e4e0cb
  Peter van 't Hof authored 9 years ago
  
  16e4e0cb
- Adding todo's · 7e27eee9
  Peter van 't Hof authored 9 years ago
  
  7e27eee9
- Added output files · f430f58c
  Peter van 't Hof authored 9 years ago
  
  f430f58c
- Added extension for merge otu maps · 6f21013e
  Peter van 't Hof authored 9 years ago
  
  6f21013e
Dec 16, 2015
- Added extension for merge otu tables · 9698cb6d
  Peter van 't Hof authored 9 years ago
  
  9698cb6d
- Raise default memory · e910b28a
  Peter van 't Hof authored 9 years ago
  
  e910b28a
- Always use -f · 8fd9b095
  Peter van 't Hof authored 9 years ago
  
  8fd9b095
- Added closed reference method · c6a89d92
  Peter van 't Hof authored 9 years ago
  
  c6a89d92
- Added extension for clased reference otu picking · 15cd85a4
  Peter van 't Hof authored 9 years ago
  
  15cd85a4
- Adding output files · d222ab7e
  Peter van 't Hof authored 9 years ago
  
  d222ab7e
- Added extension for flash · 0a00efdc
  Peter van 't Hof authored 9 years ago
  
  0a00efdc