Commit 000db84e authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fix issue #248

parent 72bf90bb
......@@ -334,7 +334,7 @@ class Gsnap(val root: Configurable) extends BiopetCommandLineFunction with Refer
override def beforeGraph(): Unit = {
super.beforeGraph()
if ((!gunzip && !bunzip2) && input.forall(_.getName.endsWith(".gz"))) {
logger.info("Fastq with .gz extension found, enabled --gunzip option")
logger.debug("Fastq with .gz extension found, enabled --gunzip option")
gunzip = true
}
}
......
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