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biopet.biopet
Commits
000db84e
Commit
000db84e
authored
Dec 22, 2015
by
Peter van 't Hof
Browse files
Fix issue #248
parent
72bf90bb
Changes
1
Hide whitespace changes
Inline
Side-by-side
public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Gsnap.scala
View file @
000db84e
...
...
@@ -334,7 +334,7 @@ class Gsnap(val root: Configurable) extends BiopetCommandLineFunction with Refer
override
def
beforeGraph
()
:
Unit
=
{
super
.
beforeGraph
()
if
((!
gunzip
&&
!
bunzip2
)
&&
input
.
forall
(
_
.
getName
.
endsWith
(
".gz"
)))
{
logger
.
info
(
"Fastq with .gz extension found, enabled --gunzip option"
)
logger
.
debug
(
"Fastq with .gz extension found, enabled --gunzip option"
)
gunzip
=
true
}
}
...
...
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