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biopet.biopet
Commits
43748908
Commit
43748908
authored
Jan 15, 2016
by
Sander van der Zeeuw
Browse files
bgzip piping went wrong fix with if stdout else >
parent
c22edcf3
Changes
1
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public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Bgzip.scala
View file @
43748908
...
...
@@ -36,5 +36,5 @@ class Bgzip(val root: Configurable) extends BiopetCommandLineFunction {
def
cmdLine
=
required
(
executable
)
+
conditional
(
f
,
"-f"
)
+
" -c "
+
repeat
(
input
)
+
" > "
+
required
(
output
)
(
if
(
outputAsStsout
)
""
else
" > "
+
required
(
output
)
)
}
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