Commit 43748908 authored by Sander van der Zeeuw's avatar Sander van der Zeeuw
Browse files

bgzip piping went wrong fix with if stdout else >

parent c22edcf3
......@@ -36,5 +36,5 @@ class Bgzip(val root: Configurable) extends BiopetCommandLineFunction {
def cmdLine = required(executable) +
conditional(f, "-f") +
" -c " + repeat(input) +
" > " + required(output)
(if (outputAsStsout) "" else " > " + required(output))
}
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