Commits · 89a0324ab9467ab79528ce3908701d7b230b2822 · biowdl / tasks

Jan 19, 2022
- increase resources GRIDSS · 89a0324a
  Cats authored 3 years ago
  
  89a0324a
Nov 26, 2021
- give dictionary and index to virusbreakend · 787ad56b
  Cats authored 3 years ago
  
  787ad56b
Nov 13, 2021
- gridss more memory · d3d20400
  Cats authored 3 years ago
  
  d3d20400
Nov 12, 2021
- change gridss runtime settings · 1a9a8058
  Cats authored 3 years ago
  
  1a9a8058
- use alternative gridss image for virusbreakend · f64bd536
  Cats authored 3 years ago
  
  f64bd536
- increase gridss memory · c9657636
  Cats authored 3 years ago
  
  c9657636
Nov 11, 2021
- increase memory gridss · f9ed6158
  Cats authored 3 years ago
  
  f9ed6158
Nov 10, 2021
- upgrade gridss to 2.12.2 · 7d1f9c92
  Cats authored 3 years ago
  
  7d1f9c92
Nov 09, 2021
- try version 2.11.1 for gridss · 0a1995df
  Cats authored 3 years ago
  
  0a1995df
Nov 08, 2021
- add img input for virusbreakend · 9e868dbc
  Cats authored 3 years ago
  
  9e868dbc
Sep 24, 2021
- adjust resource settings · a7a504e4
  Cats authored 3 years ago
  
  a7a504e4
Jul 08, 2021
- typo · d28a2a52
  Cats authored 3 years ago
  
  d28a2a52
- fix wrong placeholder · 28b1a835
  Cats authored 3 years ago
  
  28b1a835
- fix Xmx in AnnotateInsertedSequence · c8040213
  Cats authored 3 years ago
  
  c8040213
Jul 07, 2021
- add threads to repeatmasker · 9d3b5a55
  Cats authored 3 years ago
  
  9d3b5a55
- increase memory repeatmasker · 4a32a443
  Cats authored 3 years ago
  
  4a32a443
Jul 05, 2021
- increase time for GridssAnnotateVcfRepeatmasker · 477f00f5
  Cats authored 3 years ago
  
  477f00f5
Jul 02, 2021
- adjust repeatmasker time · 497f12a7
  Cats authored 3 years ago
  
  497f12a7
- set default timeMinutes GridssAnnotateVcfRepeatmasker to 120 · 7c5ce8c0
  Cats authored 3 years ago
  
  7c5ce8c0
- fix missing backslash · 44a70a39
  Cats authored 3 years ago
  
  44a70a39
Jul 01, 2021
- remove tabix from gridss · 3c92beac
  Cats authored 3 years ago
  
  3c92beac
Jun 28, 2021
- add virusbreakend · 04c65ab3
  Cats authored 3 years ago
  
  04c65ab3
- update some version and add repeatmasker annotation for gridss · 545f63af
  Cats authored 3 years ago
  
  545f63af
May 19, 2021
- adjust runtime settings · 32c08100
  Cats authored 3 years ago
  
  32c08100
Apr 14, 2021
- add gridss properties · a4d5102d
  Cats authored 4 years ago
  
  a4d5102d
Apr 12, 2021
- memory and runtime adjustements · 0862eab3
  Cats authored 4 years ago
  
  0862eab3
Feb 18, 2021
- fix missing backslash · 8283c509
  Cats authored 4 years ago
  
  8283c509
Feb 16, 2021
- update versions, memory, etc · 2792266f
  Cats authored 4 years ago
  
  2792266f
Feb 09, 2021
- small adjustments · eac2b302
  Cats authored 4 years ago
  
  eac2b302
Dec 16, 2020
- add purple outputs · 9896f4fc
  Cats authored 4 years ago
  
  9896f4fc
Nov 09, 2020
- Update more tasks. · 68d98441
  JasperBoom authored 4 years ago
  
  68d98441
- Upload some more tasks. · 47aab9c5
  JasperBoom authored 4 years ago
  
  47aab9c5
Nov 02, 2020
- Add another batch of updates. · ca4fe2d9
  JasperBoom authored 4 years ago
  
  ca4fe2d9
Oct 26, 2020
- add license notice to snpeff, add index input for bcftools annotate, and BWA... · 674158b8
  Cats authored 4 years ago
  
  add license notice to snpeff, add index input for bcftools annotate, and BWA mem index image input for gridss annotate inserted sequences
  674158b8
- add some missing inputs to gridss AnnotateInsertedSequence and add missing \ to bcftools Filter · 208e8f46
  Cats authored 4 years ago
  
  208e8f46
Oct 22, 2020
- add some # !UnknownRuntimeKey · cd64c02f
  Cats authored 4 years ago
  
  cd64c02f
- add AnnotateInsertedSequence task to gridss.wdl · 6581d965
  Cats authored 4 years ago
  
  6581d965
Oct 16, 2020
- add gripss, timeMinutes for gridss, fix typos · a772e377
  Cats authored 4 years ago
  
  a772e377
Aug 14, 2020
- small fix · 1e8155c2
  cagaser authored 4 years ago
  
  1e8155c2
- add parameter_meta for SVcalling.gridss.jvmHeapSizeGb · e941b853
  cagaser authored 4 years ago
  
  e941b853